FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH341.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH341.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7330
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG417256.91678035470669No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG190125.93451568894952No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG1171.596180081855389No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG550.7503410641200546No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG520.7094133697135061No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG290.39563437926330147No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA290.39563437926330147No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG220.30013642564802184No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG210.286493860845839No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG180.24556616643929058No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG180.24556616643929058No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG180.24556616643929058No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTGA170.2319236016371078No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTTTCCGTAGGTG160.21828103683492497No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAATAACAAGGTTTCCGTAGGTG160.21828103683492497No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG160.21828103683492497No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG160.21828103683492497No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG160.21828103683492497No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG150.20463847203274216No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG150.20463847203274216No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG130.17735334242837653No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT130.17735334242837653No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG130.17735334242837653No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTA130.17735334242837653No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG120.1637107776261937No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG120.1637107776261937No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG120.1637107776261937No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG120.1637107776261937No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTG110.15006821282401092No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGCG110.15006821282401092No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG100.1364256480218281No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCATAACAAGGTTTCCGTAGGTG100.1364256480218281No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAGCAAGGTTTCCGTAGGTG100.1364256480218281No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG100.1364256480218281No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTACGTAGGTG90.12278308321964529No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG90.12278308321964529No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG90.12278308321964529No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTTTCCGTAGGTG90.12278308321964529No Hit
GGCTTGGCCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG90.12278308321964529No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCATAGGTG80.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGCTTCCGTAGGTG80.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCAGTAGGTG80.10914051841746249No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATGACAAGGTTTCCGTAGGTG80.10914051841746249No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)