FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10867
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG470343.27781356400111No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG435340.057053464617645No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG1861.711603938529493No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG800.7361737370019324No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG380.3496825250759179No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG270.2484586362381522No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG270.2484586362381522No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTGA260.23925646452562804No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA260.23925646452562804No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG250.2300542928131039No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG240.22085212110057972No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG230.2116499493880556No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG230.2116499493880556No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT220.20244777767553143No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG220.20244777767553143No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTCCCGTAGGTG210.19324560596300727No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTATGTG210.19324560596300727No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG210.19324560596300727No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTT190.17484126253795895No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCATAACAAGGTTTCCGTAGGTG190.17484126253795895No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAATAACAAGGTTTCCGTAGGTG190.17484126253795895No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG190.17484126253795895No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG180.1656390908254348No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACGAGGTTTCCGTAGGTG180.1656390908254348No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAATGTTTCCGTAGGTG180.1656390908254348No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG170.15643691911291063No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG170.15643691911291063No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG170.15643691911291063No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAGGGTTTCCGTAGGTG170.15643691911291063No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG160.1472347474003865No Hit
GGCTTGGTCATTTAGAGTAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG160.1472347474003865No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCATAACAAGGTTTCCGTAGGTG160.1472347474003865No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG150.13803257568786234No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCTGTAGGTG150.13803257568786234No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGCG150.13803257568786234No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGCTTCCGTAGGTG150.13803257568786234No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCAGTAGGTG150.13803257568786234No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG150.13803257568786234No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG140.12883040397533818No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG140.12883040397533818No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG140.12883040397533818No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG140.12883040397533818No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG130.11962823226281402No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG130.11962823226281402No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG120.11042606055028986No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG110.10122388883776572No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG110.10122388883776572No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTGGGTG110.10122388883776572No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG110.10122388883776572No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCATAACAAGGTTTCCGTAGGTG110.10122388883776572No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)