FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH311.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH311.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1952
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG143673.5655737704918No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG1427.274590163934426No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG271.3831967213114753No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTAACCGTAGGTG231.1782786885245902No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG160.819672131147541No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG120.6147540983606558No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA120.6147540983606558No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG90.4610655737704918No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG80.4098360655737705No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG80.4098360655737705No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT70.35860655737704916No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG70.35860655737704916No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG70.35860655737704916No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG70.35860655737704916No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG60.3073770491803279No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG60.3073770491803279No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG60.3073770491803279No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG50.25614754098360654No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG50.25614754098360654No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG50.25614754098360654No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG50.25614754098360654No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG50.25614754098360654No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTTTCCGTAGGTG40.20491803278688525No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG40.20491803278688525No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.20491803278688525No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCATAGGTG40.20491803278688525No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG40.20491803278688525No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTG40.20491803278688525No Hit
GGATTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCGCTGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTACCAAGGTTTCCGTAGGTG30.15368852459016394No Hit
GGCTTAGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTTTCCGTAGGTG30.15368852459016394No Hit
GGCCTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCAGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG30.15368852459016394No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTACCCGTAGGTG30.15368852459016394No Hit
GGCTTGGTCATTTAAAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTAACCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGTAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGCG20.10245901639344263No Hit
GGCTTGGTCATTTAGAAGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA20.10245901639344263No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTAGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTGA20.10245901639344263No Hit
GGATTGGTCATTTAGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCATAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTA20.10245901639344263No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTAAGTAGGTG20.10245901639344263No Hit
GACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.10245901639344263No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)