FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH305.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH305.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8778
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG418147.63043973570289No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGTG258229.414445203918888No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG3503.9872408293460926No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG2292.608794714057872No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG2192.4948735475051267No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG941.0708589655958076No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA320.36454773296878556No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTAACCGTAGGTG310.35315561631351106No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG250.2848029163818638No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG230.26201868307131465No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGTGA220.2506265664160401No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG200.22784233310549099No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG180.2050580997949419No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGTG180.2050580997949419No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTACCGTAGGTG170.19366598313966735No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTACCGTAGGTG170.19366598313966735No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG170.19366598313966735No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG160.18227386648439278No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG150.17088174982911825No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTACCGTAGGTG150.17088174982911825No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT150.17088174982911825No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG150.17088174982911825No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTACCGTAGGTG140.1594896331738437No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG140.1594896331738437No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG130.14809751651856914No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG130.14809751651856914No Hit
GGCTTGGTCATTTAGAGTAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG130.14809751651856914No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGTG130.14809751651856914No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG130.14809751651856914No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG120.1367053998632946No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTTTCCGTAGGTG110.12531328320802004No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTACCGTAGGTG110.12531328320802004No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG100.11392116655274549No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTACCGTAGGTG100.11392116655274549No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTACCGTAGGTG100.11392116655274549No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG100.11392116655274549No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG100.11392116655274549No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGCG100.11392116655274549No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG100.11392116655274549No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGTG90.10252904989747096No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTATGTG90.10252904989747096No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG90.10252904989747096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)