FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH292.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH292.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7729
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG331442.87747444688834No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG319841.37663345840342No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG1872.4194591797127702No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG1071.3843964290335102No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG921.190322163281149No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG280.362271962737741No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTCTCCGTTGGTG250.32345710958726875No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG240.31051882520377794No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGA190.24582740328632424No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG190.24582740328632424No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA180.23288911890283348No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG170.21995083451934275No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT170.21995083451934275No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTTGGTG170.21995083451934275No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTTGGTG150.19407426575236125No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTTGGTG150.19407426575236125No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG140.1811359813688705No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTACGTTGGTG140.1811359813688705No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG120.15525941260188897No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTT120.15525941260188897No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG110.14232112821839824No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG100.12938284383490747No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG100.12938284383490747No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG90.11644455945141674No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTATCCGTTGGTG90.11644455945141674No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG90.11644455945141674No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG90.11644455945141674No Hit
GGTTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG80.10350627506792598No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTTGGTG80.10350627506792598No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCAGTTGGTG80.10350627506792598No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)