FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH291.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH291.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG10052.35602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC4020.94240837696335No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG126.282722513089005No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGACCGCAGCCGC63.1413612565445024No Hit
GGCTTGGTCATTTAGAGGAAGTAATCTCGCATCGATGAAGAACGCAGCCG31.5706806282722512No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG21.0471204188481675No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGAACGCAGCCGC21.0471204188481675No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGAAGGTG10.5235602094240838No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACACGCATCGATGAAGACCGCAGCCGC10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAAACGCAGCCGCT10.5235602094240838No Hit
CGCCCGGGTATGTATATCGGCGACACAGACGACGGCTCGGGTCTGCATCA10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG10.5235602094240838No Hit
GGCTTGGTTATTTAGAGGAAGTAACTCGCATCGATGTAGAACGCAGCCGC10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGACCGCAGCCGC10.5235602094240838No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTCTCCGTAGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGAGTAAGTAACTCGCATCGATGAAGACCGCAGCCGC10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCCT10.5235602094240838No Hit
GGCTTGGTTATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC10.5235602094240838No Hit
GCTTGGTCATTTCGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGAACGCATCCGC10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGTACGCAGCCGC10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAATCTCGCATCGATGAAGAACGCGGCCG10.5235602094240838No Hit
AGGCCGGGTATGTACATAGGCGGGACCGGCAAGGCCGGCCTGCACCACCT10.5235602094240838No Hit
CGACCTGGTATGTATATCGGCGGCACCGACGAACGCGCCCTGCACCACCT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCATAACTGTAATTCAGCCCGCTAAT10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTGGGTG10.5235602094240838No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGTTTTCCTTAGTTT10.5235602094240838No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)