FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve918.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve918.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1034
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT16515.957446808510639No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT15014.506769825918761No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC12111.702127659574469No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT807.7369439071566735No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCATCGTGAATCTC454.352030947775629No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT343.2882011605415857No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC262.5145067698259185No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT222.127659574468085No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC181.7408123791102514No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA141.3539651837524178No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTCGGCTCTGTCTCTT111.0638297872340425No Hit
CGGAAGGATCATTACCACATCTCCGAGCAGCAGTGGATGTCTAGGCTCTG100.9671179883945842No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA100.9671179883945842No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGCTGTCTAGGCTCTGTCTCTT90.8704061895551257No Hit
CGGAAGGATCATTACCACACCGACCACAGCAGTGGATGTCTAGGCTCTGT90.8704061895551257No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACACCAGCAGTGGAT80.7736943907156674No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA80.7736943907156674No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTAAACCACTTTGTAT60.5802707930367506No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT60.5802707930367506No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC50.4835589941972921No Hit
CGGAAGGATCATTACCACATCTCCAGCAGTGGATGTCTAGGCTCTGTCTC50.4835589941972921No Hit
CGGAAGGATCATTACCACCGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA40.3868471953578337No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC40.3868471953578337No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA40.3868471953578337No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT30.2901353965183753No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.2901353965183753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC30.2901353965183753No Hit
CGGAAGGATAATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.2901353965183753No Hit
CGGAAGGATCATTACCACACCGACCACCGCAGTGGATGTCTAGGCTCTGT30.2901353965183753No Hit
GGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA30.2901353965183753No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGCTGTCTAGGC30.2901353965183753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC30.2901353965183753No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCCGAGACCAGCAGTGGATGT20.19342359767891684No Hit
CGGAAGGATCATTACCACCGTCGACAGCAGTGGATGTCTAGGCTCTGTCT20.19342359767891684No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA20.19342359767891684No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA20.19342359767891684No Hit
CTGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.19342359767891684No Hit
CGGAAGGATTATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.19342359767891684No Hit
CGGAAGGATCATTACCACAAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.19342359767891684No Hit
ACACCCAAGCAGATCTACAACGACCCGGCCAATCTGTTTGTGGCCAGCTT20.19342359767891684No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC20.19342359767891684No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT20.19342359767891684No Hit
CGGAAGGATCATTACCACATACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.19342359767891684No Hit
CGGAAGGATCATTACAACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.19342359767891684No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC20.19342359767891684No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC20.19342359767891684No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAACCGTATCAAC20.19342359767891684No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT20.19342359767891684No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA20.19342359767891684No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACATCAGCAGTGGATGTCTA20.19342359767891684No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTA20.19342359767891684No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.19342359767891684No Hit
CTGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.19342359767891684No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC20.19342359767891684No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT20.19342359767891684No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)