FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve907.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve907.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12547
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT628150.059775245078505No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC274021.837889535347095No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT133810.66390372200526No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA730.5818123854307803No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT360.28692117637682313No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC360.28692117637682313No Hit
CGGAAGGATCATTACCACGGACAGCAGTGGATGTCTAGGCTCTGTCTCTT360.28692117637682313No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC320.2550410456682872No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT310.24707101299115325No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG310.24707101299115325No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT300.23910098031401927No Hit
CGGAAGGATCATTACCACACTTTAAAAAACTGTCCACGTGAACTGTAAGC300.23910098031401927No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT290.23113094763688533No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA280.22316091495975135No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT280.22316091495975135No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT270.21519088228261737No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAATTGTTACAATA260.20722084960548337No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT260.20722084960548337No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA240.19128078425121542No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT240.19128078425121542No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT230.18331075157408144No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT220.1753407188969475No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT220.1753407188969475No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC190.15143062086554554No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT190.15143062086554554No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCACTTTGTAT190.15143062086554554No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT170.13549055551127762No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT160.1275205228341436No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT160.1275205228341436No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT160.1275205228341436No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC160.1275205228341436No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT150.11955049015700964No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC150.11955049015700964No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT150.11955049015700964No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT150.11955049015700964No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC140.11158045747987567No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT130.10361042480274169No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT130.10361042480274169No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT130.10361042480274169No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)