FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve846.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve846.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1719
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT31918.557300756253635No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20511.925538103548575No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA1076.224549156486329No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT834.828388598022106No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC824.7702152414194305No Hit
CGGAAGGATCATTACCACAACAGCAGTGGATGTCTAGGCTCTGTCTCTTA814.712041884816754No Hit
CGGAAGGATCATTACCACATCTCCAGCCCACGGACCAGCAGTGGATGTCT764.4211751018033745No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC613.5485747527632348No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT512.966841186736475No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC311.8033740546829553No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT261.5125072716695753No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC251.4543339150668992No Hit
CGGAAGGATCATTACCACATCTGACGCTGCAGCAGTGGATGTCTAGGCTC191.1052937754508436No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC150.8726003490401396No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACATCTCCGAGCCCACGAGA120.6980802792321117No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT110.6399069226294357No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC100.5817335660267597No Hit
CGGAAGGATCATTACCACATCTCCAGCCCACGGACCCGCAGTGGATGTCT90.5235602094240838No Hit
CGGAAGGATCATTACCACATCTCCAGCCCGCGGACCAGCAGTGGATGTCT70.4072134962187318No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT70.4072134962187318No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA60.34904013961605584No Hit
CGGAAGGATCATTACCACGGGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.29086678301337987No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT50.29086678301337987No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA40.2326934264107039No Hit
CGGAATGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.2326934264107039No Hit
CGGAAGGATCATTACCACTGCGCACGCAGCAGTGGATGTCTAGGCTCTGT40.2326934264107039No Hit
CGGAAGGATCATTACCAAAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC40.2326934264107039No Hit
CGGAAGGATCATTACCACTCGTCGACAGCAGTGGATGTCTAGGCTCTGTC40.2326934264107039No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT40.2326934264107039No Hit
CGGAAGGATCATTACCACATCTCCAGCACACGGACCAGCAGTGGATGTCT30.17452006980802792No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCCCTGTCTC30.17452006980802792No Hit
CGGAAAGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.17452006980802792No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTATCT30.17452006980802792No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTCGGCTCTGTCTCTT30.17452006980802792No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAACGCTGAATCTC30.17452006980802792No Hit
CGGAAGGATCATTACCACGAGGCAGCAGTGGATGTCTAGGCTCTGTCTCT30.17452006980802792No Hit
CGGAAGGATCATTACCACGACACCAGCAGTGGATGTCTAGGCTCTGTCTC30.17452006980802792No Hit
CGGAAGGATCATTACCAATCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC30.17452006980802792No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.17452006980802792No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC30.17452006980802792No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.17452006980802792No Hit
CGGAAGGATCATTACCACAAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.17452006980802792No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGCGGATGTCTAGGCTCTGTC30.17452006980802792No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT30.17452006980802792No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.17452006980802792No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTATCTTA30.17452006980802792No Hit
CGGAAGGATCATTACTACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.11634671320535195No Hit
CGGAAGGATCATTACCACTCGTCGGGAGCAGTGGATGTCTAGGCTCTGTC20.11634671320535195No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATAG20.11634671320535195No Hit
CGGAATGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA20.11634671320535195No Hit
CGTAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACTCGTCGGAAGCAGTGGATGTCTAGGCTCTGTC20.11634671320535195No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTCGGCTCTGTCTCTT20.11634671320535195No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT20.11634671320535195No Hit
CTGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.11634671320535195No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTATGTCTCTTATAC20.11634671320535195No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT20.11634671320535195No Hit
CGGAAGGATCATTATCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACATCTAGCGCACGAGACCA20.11634671320535195No Hit
CGGAAGGATCATTACCAAATCTCCAGCCCACGGACCAGCAGTGGATGTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACATCTCCAGCCCACGGACCAGCAGTGGATGTAT20.11634671320535195No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTATCTTATAC20.11634671320535195No Hit
CGGAAGGATCATTACAACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACCCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.11634671320535195No Hit
CGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACATGAACCACTTTGTAT20.11634671320535195No Hit
CGGAAGGATCATTACCACATCTCCAACCCACGGACCAGCAGTGGATGTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC20.11634671320535195No Hit
CGGAAGGATCATTACCACGAGACTAGCAGTGGATGTCTAGGCTCTGTCTC20.11634671320535195No Hit
CGGAAGGATCATTACCACGAGACAGCAGTAGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCCCTTATAC20.11634671320535195No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGCCTAGGCTCTGTC20.11634671320535195No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.11634671320535195No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTTGATGTCTAGGCTCTGTC20.11634671320535195No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCCCTGTCTCTT20.11634671320535195No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACGAGACACCAGTGGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTA20.11634671320535195No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTCTAAGAGACT20.11634671320535195No Hit
TGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit
CGGAAGGATCATTACCAAAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.11634671320535195No Hit
CGGAAGGATCATTACCACGAGACGGCAGTGGATGTCTAGGCTCTGTCTCT20.11634671320535195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)