FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve845.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve845.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1630
Sequences flagged as poor quality0
Sequence length301
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC94157.73006134969325No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC1338.159509202453988No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT935.705521472392638No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC895.460122699386503No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT442.6993865030674846No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA362.208588957055215No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC90.5521472392638037No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC80.49079754601227No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC70.4294478527607362No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC60.36809815950920244No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCATCCCTCGTGAACTTGTAC60.36809815950920244No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC50.3067484662576687No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCCCTGTCTC40.245398773006135No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC40.245398773006135No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC40.245398773006135No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA40.245398773006135No Hit
CGGAGGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCCCTGTCTCT30.18404907975460122No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA30.18404907975460122No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA30.18404907975460122No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCTACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC30.18404907975460122No Hit
CGGAAGGATCATTACCACACCAAAAACAATTGTACCTGTGAAATTTGAAA30.18404907975460122No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACGGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTCT20.1226993865030675No Hit
CGGAAGGATCATTACCAATCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT20.1226993865030675No Hit
CGGAAGGTCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA20.1226993865030675No Hit
CGGAAGGATCATTACCACGAGGCCAGCAGTGGATGTCTAGGCTCTGTCTC20.1226993865030675No Hit
CGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA20.1226993865030675No Hit
CAGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1226993865030675No Hit
CGTAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.1226993865030675No Hit
CGGAAGGATCATTACGACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACCGTCGGCATCAGTGGATGTCTAGGCTCTGTCT20.1226993865030675No Hit
CGGGAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1226993865030675No Hit
AGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTATC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTTGATGTCTAGGCTCTGTCTCT20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACGATACCAGCAGTGGATGTCTAGGCTCTGTCTC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACTCGTCGGCATCAGTGGATGTCTAGGCTCTGTC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAGCCGTATCAAC20.1226993865030675No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTT20.1226993865030675No Hit
CGGAAGTATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC20.1226993865030675No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCATCCCTCGTGAACTTTACT20.1226993865030675No Hit
CGGAATGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT20.1226993865030675No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTATGCTCTGTCT20.1226993865030675No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1226993865030675No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)