FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve843.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve843.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23
Sequences flagged as poor quality0
Sequence length301
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC939.130434782608695No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA521.73913043478261No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC14.3478260869565215No Hit
CGGAAGGTTCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC14.3478260869565215No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC14.3478260869565215No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGATCCGTATCAAC14.3478260869565215No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATTCAA14.3478260869565215No Hit
CGCCCGGGGATGTATATCGGCGGCACCGACGAGCGCGCTTTGCACCATCT14.3478260869565215No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACTGTCGGTAT14.3478260869565215No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA14.3478260869565215No Hit
CGGAAGGATCATTACCACACCTAAAAACGTTCCACGTGAACCGTATAAAC14.3478260869565215No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)