FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve840.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve840.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5840
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC173529.708904109589042No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT110818.972602739726028No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAATTGTTACAATA79413.595890410958905No Hit
CGGAAGGATCATTACCACACTTTAAAAAACTGTCCACGTGAACTGTAAGC1542.636986301369863No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC1312.243150684931507No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC1001.7123287671232876No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT811.3869863013698631No Hit
CGGAAGGATCATTACCACTCACCCACCAGCAGTGGATGTCTAGGCTCTGT781.3356164383561644No Hit
CGGAAGGATCATTACCACATCTCGAGCCACGAGACCAGCAGTGGATGTCT530.9075342465753424No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA480.821917808219178No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC480.821917808219178No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT430.7363013698630138No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA390.6678082191780822No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGAGACCCAGCAGTGGATGT370.6335616438356164No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT300.5136986301369862No Hit
CGGAAGGATCATTACCACATCGTCAGCAGTGGATGTCTAGGCTCTGTCTC270.4623287671232877No Hit
CGGAAGGATCATTACCACACCAAATACCCATCCACGTGAACGATTGAACT250.4280821917808219No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGCAGTGGATGTCTAGGCTC220.3767123287671233No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC210.3595890410958904No Hit
CGGAAGGATCATTACCACACTTTAAAAAACTGTCCACGTGCACTGTAAGC210.3595890410958904No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC160.273972602739726No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT150.2568493150684931No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC150.2568493150684931No Hit
CGGAAGGATCATTACCACACCTAAAACCTTTCAACGTGAACCGTATCAAC140.2397260273972603No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC130.2226027397260274No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA130.2226027397260274No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC120.2054794520547945No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC110.18835616438356165No Hit
CGGAAGGATCATTACCACGAGACACGACACCAGCAGTGGATGTCTAGGCT110.18835616438356165No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC110.18835616438356165No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA100.17123287671232876No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT90.1541095890410959No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC90.1541095890410959No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA90.1541095890410959No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG90.1541095890410959No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAATTGTTACGATA80.136986301369863No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC80.136986301369863No Hit
CGGAAGGATCATTACCACACCTAAAACTACCCACGTGAATTGTTACAATA80.136986301369863No Hit
CGGAAGGATCATTACCACACCTAAGACTATCCACGTGAATTGTTACAATA80.136986301369863No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACATGAACCGTATCAAC80.136986301369863No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT70.11986301369863014No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC70.11986301369863014No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC70.11986301369863014No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC70.11986301369863014No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.11986301369863014No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC70.11986301369863014No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.11986301369863014No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT60.10273972602739725No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT60.10273972602739725No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAATCGTTACAATA60.10273972602739725No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.10273972602739725No Hit
CGGAAGGATCATTACCACACTTTAAAACACTGTCCACGTGAACTGTAAGC60.10273972602739725No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.10273972602739725No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT60.10273972602739725No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC60.10273972602739725No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT60.10273972602739725No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)