FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve839.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve839.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1848
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA40922.13203463203463No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC26014.06926406926407No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT23612.770562770562771No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC1749.415584415584416No Hit
CGGAAGGATCATTACCACCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT1357.305194805194805No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC1266.8181818181818175No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT945.086580086580087No Hit
CGGAAGGATCATTACCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCTT231.2445887445887447No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC120.6493506493506493No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT80.4329004329004329No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA70.3787878787878788No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAA50.27056277056277056No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA40.21645021645021645No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA40.21645021645021645No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA40.21645021645021645No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA40.21645021645021645No Hit
CGGAAGGATCATTACCACGAACAGCAGTGGATGTCTCGGCTCTGTCTCTT40.21645021645021645No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA40.21645021645021645No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA30.16233766233766234No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.16233766233766234No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.16233766233766234No Hit
CGGAAGGATCATTACCACTCGTCGGAAGCAGTGGATGTCTAGGCTCTGTC30.16233766233766234No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGCAT30.16233766233766234No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG30.16233766233766234No Hit
CGGAAGGATCATTACCAGCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT30.16233766233766234No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAA30.16233766233766234No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC30.16233766233766234No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCCCTGTC30.16233766233766234No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCGCTTTGTAT20.10822510822510822No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCGCTTTGTAT20.10822510822510822No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAC20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA20.10822510822510822No Hit
CGGAAGGATCATTACCAACCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA20.10822510822510822No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.10822510822510822No Hit
CGGAAGGATCATTACTACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10822510822510822No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCCCTGTCTC20.10822510822510822No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC20.10822510822510822No Hit
CGGAAGGATCATTACCACTTGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA20.10822510822510822No Hit
CGTAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC20.10822510822510822No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10822510822510822No Hit
CGGAAGGATCATTACCACTCGTCGGCAGAAGTGGATGTCTAGGCTCTGTC20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA20.10822510822510822No Hit
AGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10822510822510822No Hit
CGGAAGTATCATTACCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC20.10822510822510822No Hit
CGGAAGGATCATTACTACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.10822510822510822No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCCCTGTC20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAA20.10822510822510822No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGACCCGCTTTGTATTG20.10822510822510822No Hit
CGGAAGGATCATTACCACACGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.10822510822510822No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA20.10822510822510822No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10822510822510822No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.10822510822510822No Hit
CGGAAGGATCATTACCACGATACCAGCAGTGGATGTCTAGGCTCTGTCTC20.10822510822510822No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA20.10822510822510822No Hit
CGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTATT20.10822510822510822No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCGCTTTGTAT20.10822510822510822No Hit
CGGAAGGATTATTACCACCCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.10822510822510822No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT20.10822510822510822No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC20.10822510822510822No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAAGCTCTGTC20.10822510822510822No Hit
CGGAAGGATCATTACCACCCAGCAGTGGATGTCTAGGCCCTGTCTCTTAT20.10822510822510822No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)