FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve836.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve836.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1536
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC19412.630208333333334No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGCTCGTAATCTC1338.658854166666668No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT1288.333333333333332No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1217.877604166666667No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT1147.421875No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT1056.8359375No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT956.184895833333334No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA764.947916666666666No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT483.125No Hit
CGGAAGGATCATTACCACGAGCAGCAGTGGATGTCTAGGCTCTGTCTCTT452.9296875No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT211.3671875No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC181.171875No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC120.78125No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTCGGCTCTGTCTCTT100.6510416666666667No Hit
CGGAAGGATCATTACCACTTGTCGGCAGCAGTGGATGTCTAGGCTCTGTC90.5859375No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC90.5859375No Hit
CGGAAGGATCATTACCACACCTCCGAGCCCACGAGACCAGCAGTGGATGT70.4557291666666667No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTCGGCTCTGTCTCTT60.390625No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA40.26041666666666663No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGCTCGTAACCTC40.26041666666666663No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGCTGTCTAGGCTCTGTCTCTT40.26041666666666663No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGCTGTCTAGGCTCTGTCTCTT40.26041666666666663No Hit
CGGAAGGATCATTACCACTCGTCTGCAGCAGTGGATGTCTAGGCTCTGTC40.26041666666666663No Hit
CGGAAGGATCATTACCACATCTCCGACCCCACGAGACCAGCAGTGGATGT40.26041666666666663No Hit
CGGAAGGATCATTACCACTCGTCGCCAGCAGTGGATGTCTAGGCTCTGTC30.1953125No Hit
CGGAAGGATCATTACCACAGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT30.1953125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTAACAAC30.1953125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC30.1953125No Hit
CGTAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC30.1953125No Hit
CGGAAGGATCATTACCACATACAGCAGTGGATGTCTAGGCTCTGTCTCTT30.1953125No Hit
CGGAAGGATCATTACCACGAGCAGCAGTGGATGTCTCGGCTCTGTCTCTT30.1953125No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCCGAGACTGCTCGTAATCTC30.1953125No Hit
CGGAAGGATCATTACCACAAGCAGTGGATGTCTAGGCTCTGTCTCTTATA30.1953125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC30.1953125No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCCGAGACCAGCAGTGGATGT20.13020833333333331No Hit
CGGAATGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.13020833333333331No Hit
CGGAAGGATCATTACCACATCTAAAAACTTTCCACGTGAACCGTATCAAC20.13020833333333331No Hit
CGGAAGGATCATTACCACATCCCCGAGCCCACGAGACCAGCAGTGGATGT20.13020833333333331No Hit
CGGAAGGATCATTACCAATCCGAGCCCACGAGACAGCAGTGGATGTCTAG20.13020833333333331No Hit
CGGAAGGATCATTACCACTCGTTGGCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACGCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.13020833333333331No Hit
CGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT20.13020833333333331No Hit
CGGAAGGATCATTACCACTCGCCGGCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACTCCGAGCCCACGAGACTGCTCGTAATCTCGTA20.13020833333333331No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.13020833333333331No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGATGTCTAGGCTCTGTCTCTTA20.13020833333333331No Hit
CGGAAGGATCATTACCACATCTCCGAGACCACGAGACCAGCAGTGGATGT20.13020833333333331No Hit
CGGAAGGATCATTACCACTTGTCGCCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCATC20.13020833333333331No Hit
CGGAAGGAGCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACTCGTAGGCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTCTCTCTT20.13020833333333331No Hit
CGGAAGGATTATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT20.13020833333333331No Hit
CGGAAGGATATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT20.13020833333333331No Hit
CGGAAGGATCATTACCACCGCCAGCAGTGGATGTCTAGGCTCTGTCTCTT20.13020833333333331No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC20.13020833333333331No Hit
CGGAAGGATCATTACCACTCGTCGACAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTATCT20.13020833333333331No Hit
CGGAAGGATCATTACAACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA20.13020833333333331No Hit
CCGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.13020833333333331No Hit
CGGAAGGATCATTACCACAGACAGGAGTGGATGTCTAGGCTCTGTCTCTT20.13020833333333331No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA20.13020833333333331No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTTGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGCTCTTATA20.13020833333333331No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTTTGTCTCT20.13020833333333331No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTAAC20.13020833333333331No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC20.13020833333333331No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit
CGGAAGGATCATTACCAAAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.13020833333333331No Hit
CGGAAGGATCATTATCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.13020833333333331No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)