FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve831.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve831.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4786
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC204242.666109486000835No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAACCGTTGTAAA70514.730463852904304No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA55711.638111157542834No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC1092.277475971583786No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC931.9431675720852488No Hit
CGGAAGGATCATTACCACAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT521.0865022983702466No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA470.9820309235269535No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGTAAA270.5641454241537819No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA270.5641454241537819No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA250.5223568742164647No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC220.45967404931048894No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT200.41788549937317176No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC190.3969912244045131No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC170.355202674467196No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC140.29251984956122024No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC130.27162557459256165No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC120.25073129962390306No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA120.25073129962390306No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC110.22983702465524447No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAAACA100.20894274968658588No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC100.20894274968658588No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC100.20894274968658588No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC90.1880484747179273No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC90.1880484747179273No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC90.1880484747179273No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAC90.1880484747179273No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.1880484747179273No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC90.1880484747179273No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.1880484747179273No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC80.1671541997492687No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGCAGTGGATGTCTAGGCTC80.1671541997492687No Hit
CGGAAGGATCATTACCACACCATAAAACTCTCCACGTGAACCGTTGTAAA80.1671541997492687No Hit
CGGAAGGATCATTACCACGCCATAAAACTTTCCACGTGAACCGTTGTAAA80.1671541997492687No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC80.1671541997492687No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC80.1671541997492687No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC80.1671541997492687No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC70.14625992478061012No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA70.14625992478061012No Hit
CGGAAGGATCATTACCACACCTTAAAACTATCCACGTGAACCGTTTGTAC70.14625992478061012No Hit
CGGAAGGATCATTACCACACCAAAAACAAACCCACGTGAACCGTTAACAA70.14625992478061012No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.14625992478061012No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTAAACA70.14625992478061012No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC70.14625992478061012No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTCAATA70.14625992478061012No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGCGAACCGTTGTAAA60.12536564981195153No Hit
CGGAAGGATCATTACCACCATAAAACTTTCCACGTGAACCGTTGTAAATA60.12536564981195153No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC60.12536564981195153No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.12536564981195153No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC60.12536564981195153No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACAGTTAAACA60.12536564981195153No Hit
CGGAAGGATCATTACCACACCATAAAACTTTCCACGTGAGCCGTTGTAAA60.12536564981195153No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC60.12536564981195153No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCTCGTGAACCGTATCAAC50.10447137484329294No Hit
CGGAAGGATCATTACCACTCCTAAAAACTTTCCACGTGAACCGTATCAAC50.10447137484329294No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAC50.10447137484329294No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC50.10447137484329294No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTAACAAC50.10447137484329294No Hit
CGGAAGGATCATTACCACACCATAAAGCTTTCCACGTGAACCGTTGTAAA50.10447137484329294No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.10447137484329294No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.10447137484329294No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)