FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve830.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve830.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15993
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT947759.25717501406865No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC331220.709060213843557No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCTTTGTA1200.7503282686175202No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA1160.7253173263302695No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCGCTTTGTATTG740.46270243231413744No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT610.3814168698805727No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGCTTTGTAT530.3313949853060714No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCGCTTTGTAT450.28137310073157007No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCGCTTTGTAT440.2751203651597574No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCGCTTTGTAT430.26886762958794475No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCCTTGTAT420.2626148940161321No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT420.2626148940161321No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTTTGTAT420.2626148940161321No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTCGTAT390.24385668730069407No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCGCTTTGTAT360.22509848058525606No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGCTTTGTA340.2125930094416307No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCGCTTTGTAT330.20634027386981804No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT330.20634027386981804No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCGCTTTGTAT330.20634027386981804No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAC320.2000875382980054No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTCTGTAT310.1938348027261927No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCGCTTTGTAT300.18758206715438006No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCGCTTTGTAT280.1750765960107547No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA280.1750765960107547No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAATCGCTTTGTAT270.16882386043894204No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCGCTTTGTAT270.16882386043894204No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT250.1563183892953167No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT250.1563183892953167No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTGT250.1563183892953167No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAGCTTTGTAT250.1563183892953167No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT240.15006565372350403No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGCAT240.15006565372350403No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCGCTTTGTAT240.15006565372350403No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACA240.15006565372350403No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCGCTTTGTAT230.14381291815169137No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGCTTTGTAT210.13130744700806604No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCGCTTTGTAT210.13130744700806604No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCGCTTTGTAT210.13130744700806604No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCGCTTTGTAT210.13130744700806604No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT200.12505471143625335No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC200.12505471143625335No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT190.11880197586444069No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACTGCTTTGTAT190.11880197586444069No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT190.11880197586444069No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC180.11254924029262803No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC170.10629650472081535No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC170.10629650472081535No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGATTTGTAT170.10629650472081535No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGCTTTGTAT170.10629650472081535No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC170.10629650472081535No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCGCTTTGTAT170.10629650472081535No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC170.10629650472081535No Hit
CGGAAGGATCATTACCACACCAGAAACTATCCACGTGAACCGCTTTGTAT160.1000437691490027No Hit
CGGAAGGATCATTACCCCACCAAAAACTATCCACGTGAACCGCTTTGTAT160.1000437691490027No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)