FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve828.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve828.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2576
Sequences flagged as poor quality0
Sequence length301
%GC46

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA66425.77639751552795No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT57222.204968944099377No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT1596.172360248447204No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC1124.3478260869565215No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGCGTATACATCTC1114.309006211180124No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT622.406832298136646No Hit
CGGAAGGATCATTACCACGTCGTCGTCAGCAGTGGATGTCTAGGCTCTGT491.9021739130434785No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA481.8633540372670807No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC371.436335403726708No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT351.358695652173913No Hit
CGGAAGGATCATTACCACGCCAGCAGTGGATGTCTAGGCTCTGTCTCTTA341.3198757763975155No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC240.9316770186335404No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC210.8152173913043478No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT190.7375776397515528No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT140.5434782608695652No Hit
CGGAAGGATCATTACCACCTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC120.4658385093167702No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA90.34937888198757766No Hit
CGGAAGGATCATTACCACACCAAAAGACTATCCACGTGAACCGTTAAACA70.2717391304347826No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT70.2717391304347826No Hit
CGGAAGTATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT60.2329192546583851No Hit
CGGAAGGATCATTACCACACCAAGAACAATCCACGTGAACCGTCAGAAAT60.2329192546583851No Hit
CGGAAGGATCATTACCACACCAGAAAACTATCCACGTGAACCGTTAAACA60.2329192546583851No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCGGAAAT60.2329192546583851No Hit
CGGAATGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA60.2329192546583851No Hit
CGGAAGGATCATTACCAAACCAAAAACAATCCACGTGAACCGTCAGAAAT50.19409937888198758No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCCGAGACGCGTATACATCTC50.19409937888198758No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTTAACCGTTAAACA50.19409937888198758No Hit
CGGAAGGATAATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA50.19409937888198758No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT50.19409937888198758No Hit
CGGAAGTATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.15527950310559005No Hit
CGGAAGGATCATTACCACACCAAAAACAATCAACGTGAACCGTCAGAAAT40.15527950310559005No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTAAACA40.15527950310559005No Hit
CGGAAGGATCATTACCACGCCAAAAAACTATCCACGTGAACCGTTAAACA40.15527950310559005No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA40.15527950310559005No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGCGTATACACCTC40.15527950310559005No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGGAAT40.15527950310559005No Hit
CGGAAGGATCATTACCACGTCGTCGTCAGCCGTGGATGTCTAGGCTCTGT40.15527950310559005No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC40.15527950310559005No Hit
CGGAAGGATCATTACCACACCAAAGAAACTTACCACGTGAATCTGTACTT40.15527950310559005No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGCCAGAAAT30.11645962732919254No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCCCT30.11645962732919254No Hit
CGGAAGGATCATTACCACATCTCCGAGCAGCAGTGGATGTCTAGGCTCTG30.11645962732919254No Hit
CGGAAGGATCATTACCCCACCAAAAAACTATCCACGTGAACCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACTAAAAAACTATCCACGTGAACCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAAATATCCACGTGAACCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAGT30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAACCGTCAGAAAT30.11645962732919254No Hit
TGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACG30.11645962732919254No Hit
CTGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA30.11645962732919254No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGCGTATACAACTC30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAGCAATCCACGTGAACCGTCAGAAAT30.11645962732919254No Hit
CGGAAGGATCATTACCACACCGAAAAACTATCCACGTGAACCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAGAAA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCACCACGTGAATCTGTACTT30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAGCCGTCAGAAAT30.11645962732919254No Hit
CGGAAGGATCATTATCACACCAAAAAACTATCCACGTGAACCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAGACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAGCCGTTAAACA30.11645962732919254No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGAGAACCGTTAAACA30.11645962732919254No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)