FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve820.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve820.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13017
Sequences flagged as poor quality0
Sequence length301
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT678452.116463086732736No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAAAT275821.187677652300838No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT3222.4736882538219254No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA1150.8834600906506876No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT720.5531228393639087No Hit
CGGAAGGATCATTACCACTTCAGCAGTGGATGTCTAGGCTCTGTCTCTTA660.5070292694169164No Hit
CGGAAGGATCATTACCACTCCGACCACAGCAGTGGATGTCTAGGCTCTGT550.4225243911807636No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG540.41484212952293154No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTTTAAATA530.4071598678650995No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA510.3917953445494353No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAGCCGTCAGAAAT440.3380195129446109No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT430.3303372512867788No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGGAAT410.3149727279711147No Hit
CGGAAGGATCATTACCACACCAAAGACAATCCACGTGAACCGTCAGAAAT380.2919259429976185No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT380.2919259429976185No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGGACCGTCAGAAAT370.28424368133978645No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC350.2688791580241223No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTTAACCGTCAGAAAT320.2458323730506261No Hit
CGGAATGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT320.2458323730506261No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA310.23815011139279402No Hit
CGGAAGGATCATTACCACGCCAAAAACAATCCACGTGAACCGTCAGAAAT300.23046784973496198No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGCCAGAAAT300.23046784973496198No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGCGAACCGTCAGAAAT300.23046784973496198No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCGGAAAT290.22278558807712992No Hit
CGGAAGGATCATTACCACACCAAGAACAATCCACGTGAACCGTCAGAAAT290.22278558807712992No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTTTAAAT290.22278558807712992No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAACCGTCAGAAAT280.21510332641929783No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT260.19973880310363373No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCTCGTGAACCGTTTAAAT260.19973880310363373No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCATAAAT260.19973880310363373No Hit
CGGAAGGATCATTACCACACCAAAAACAGTCCACGTGAACCGTCAGAAAT250.19205654144580164No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAGAT250.19205654144580164No Hit
CGGAAGGATCATTACCACACCAAAAACGATCCACGTGAACCGTCAGAAAT250.19205654144580164No Hit
CGGAAGGATCATTACCACACCGAAAACAATCCACGTGAACCGTCAGAAAT240.18437427978796958No Hit
CGGAAGTATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT240.18437427978796958No Hit
CGGAAGGATCATTACCACACCAAAAGCAATCCACGTGAACCGTCAGAAAT230.17669201813013752No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCGCGTGAACCGTCAGAAAT210.16132749481447337No Hit
CGGAAGGATCATTACAACACCAAAAACAATCCACGTGAACCGTCAGAAAT210.16132749481447337No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAAAT200.15364523315664133No Hit
CGGAAGGATCATTACCACACCAAAAACAATCAACGTGAACCGTCAGAAAT190.14596297149880924No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACAGTCAGAAAT190.14596297149880924No Hit
CGGAAGGATAATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT190.14596297149880924No Hit
CGGAAGGATCATTACCACACCAAAAACAATACACGTGAACCGTCAGAAAT190.14596297149880924No Hit
CTGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT180.13828070984097718No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTTTAAATAT180.13828070984097718No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC180.13828070984097718No Hit
CGGAAGGATCATTACCAAACCAAAAACAATCCACGTGAACCGTCAGAAAT180.13828070984097718No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAAGT180.13828070984097718No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTTAGAAAT180.13828070984097718No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTTTAAAT170.13059844818314512No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTTTAAAT170.13059844818314512No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC170.13059844818314512No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTTTAAAT170.13059844818314512No Hit
CGGAAGGATTATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT170.13059844818314512No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTCAGAAAT160.12291618652531305No Hit
CGGAAGGATCATTACCACACCAAAAATAATCCACGTGAACCGTCAGAAAT160.12291618652531305No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAGT160.12291618652531305No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTTTAAAT160.12291618652531305No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTAAGAAAT160.12291618652531305No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTTTAAAT160.12291618652531305No Hit
CGGAAGGATCATTACCACACAAAAAACAATCCACGTGAACCGTCAGAAAT150.11523392486748099No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTTTAAATA150.11523392486748099No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAAAATGTACTGTC140.10755166320964892No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)