FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve816.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve816.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7304
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC331445.372398685651696No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT122916.826396495071194No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGAACA104514.307228915662652No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT2012.751916757940854No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTCAATA1421.9441401971522454No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA801.095290251916758No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT620.8488499452354874No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTTGAACA280.3833515881708653No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTCAATT280.3833515881708653No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC250.3422782037239868No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC200.2738225629791895No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCAGAAA150.20536692223439212No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC150.20536692223439212No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC150.20536692223439212No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC140.19167579408543264No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC140.19167579408543264No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC140.19167579408543264No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC130.17798466593647316No Hit
CGGAAGGATCATTACCACACCTTAAAACTATCCACGTGAACCGTTTGTAC130.17798466593647316No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC120.16429353778751368No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAACA110.15060240963855423No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTATCAACA110.15060240963855423No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC110.15060240963855423No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC110.15060240963855423No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC100.13691128148959475No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC100.13691128148959475No Hit
CGGAAGGATCATTACCACACCGAAAACAATCCACGTGAACCGTCAGAAAT90.12322015334063528No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC90.12322015334063528No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC90.12322015334063528No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC90.12322015334063528No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTATCAACC90.12322015334063528No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC90.12322015334063528No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.12322015334063528No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC90.12322015334063528No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC90.12322015334063528No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTTGAACA80.10952902519167579No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC80.10952902519167579No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC80.10952902519167579No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGAACA80.10952902519167579No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC80.10952902519167579No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)