FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve814.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve814.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18507
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC787942.57308045604366No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT740239.99567731128762No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCTTTGTA3131.6912519587183226No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA970.5241260063759658No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGCTTTGTAT950.5133192845950182No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGCTTTGTA870.4700923974712271No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC470.2539579618522721No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT390.2107310747284811No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC390.2107310747284811No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC360.19452099205705947No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC360.19452099205705947No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC340.18371427027611176No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCGCTTTGTAT330.17831090938563784No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC320.172907548495164No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC310.16750418760469013No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCCTTGTAT300.16210082671421625No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA300.16210082671421625No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT290.15669746582374236No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCGCTTTGTATTG290.15669746582374236No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT290.15669746582374236No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC260.14048738315232073No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC260.14048738315232073No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC260.14048738315232073No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC260.14048738315232073No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTTTGTAT250.13508402226184688No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC250.13508402226184688No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC240.129680661371373No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC240.129680661371373No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC240.129680661371373No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT220.11887393959042523No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC220.11887393959042523No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC220.11887393959042523No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT210.11347057869995136No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC210.11347057869995136No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC210.11347057869995136No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCGCTTTGTAT200.1080672178094775No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC190.10266385691900361No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC190.10266385691900361No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT190.10266385691900361No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTCGTAT190.10266385691900361No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)