FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve808.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve808.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3934
Sequences flagged as poor quality0
Sequence length301
%GC44

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA137534.951703101169294No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA80920.564311133706152No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA71318.124046771733603No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA1062.6944585663446876No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAATCAA892.2623284189120487No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA641.626842907981698No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCTATTAAAC280.7117437722419928No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA140.3558718861209964No Hit
CGGAAGGATCATTACCACGCCTAAAACTATCCACGTGAACCGTTAACCAA120.3050330452465684No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA120.3050330452465684No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAAGCAA120.3050330452465684No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTTAACCGTTAAGCAA110.27961362480935437No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTAACGAGATCTC100.2541942043721403No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTATCCACGTGAACCGTCAAAA90.22877478393492628No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT90.22877478393492628No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTCAAAAAA90.22877478393492628No Hit
CGGAAGTATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA90.22877478393492628No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTACATAC90.22877478393492628No Hit
CGGAATGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA80.20335536349771224No Hit
CGGAAGGATCATTACCACGCCAAAAGCTATCCACGTGAACCGTTAAGCAA80.20335536349771224No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTAAGCAA80.20335536349771224No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAGCAA70.1779359430604982No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAGCCGTTAAGCAA70.1779359430604982No Hit
CGGAAGGATCATTACCACGCCAAGAACTATCCACGTGAACCGTTAAGCAA70.1779359430604982No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTCAAGCAA70.1779359430604982No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCAACGTGAACCGTTAAGCAA70.1779359430604982No Hit
CGGAAGGATCATTACCACACCTAAAGCTATCCACGTGAACCGTTAACCAA60.1525165226232842No Hit
CGGAATGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA60.1525165226232842No Hit
CTGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA60.1525165226232842No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGGACCGTTAAGCAA60.1525165226232842No Hit
CGGAAGGATCATTACCAAACCTAAAACTATCCACGTGAACCGTTAACCAA60.1525165226232842No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAGGCAA60.1525165226232842No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAACCAA60.1525165226232842No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT50.12709710218607015No Hit
CGGAAGGATCATTACCACACCTAAAACTGTCCACGTGAACCGTTAACCAA50.12709710218607015No Hit
CGGAAGTATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA50.12709710218607015No Hit
CGTAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA50.12709710218607015No Hit
CGGAAGGATCATTACCACGCCAAAAACTACCCACGTGAACCGTTAAGCAA50.12709710218607015No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGCGAACCGTTAACCAA50.12709710218607015No Hit
TGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA50.12709710218607015No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAATCAA50.12709710218607015No Hit
CGGAAGGATTATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA50.12709710218607015No Hit
CGGAAGGATTATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGGACCGTTAACCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACCTAAAACTATCCACGTGAACCGTTAACCAAAC40.10167768174885612No Hit
CGGAAGGATCATTACCACACATAAAACTATCCACGTGAACCGTTAACCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTAAACCGTTAACCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACGCTAAAAACTATCCACGTGAACCGTTAACCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAGCCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACGCCAAAAACCATCCACGTGAACCGTTAAGCAA40.10167768174885612No Hit
CGGAAGGATCATTACCACGCCAAAACTATCCACGTGAACCGTTAAGCAAA40.10167768174885612No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCGA40.10167768174885612No Hit
CGGAAGGATAATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA40.10167768174885612No Hit
CGTAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA40.10167768174885612No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)