FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve806.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve806.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10463
Sequences flagged as poor quality0
Sequence length301
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT400238.249068144891524No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC241423.071776737073495No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC7537.196788683933862No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT6376.088120042052949No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1711.63433049794514No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT1311.2520309662620663No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC1020.9748638057918378No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGACCCGTTAAGC950.9079613877473001No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAC940.8984038994552233No Hit
CGGAAGGATCATTACCACTTCAGCAGTGGATGTCTAGGCTCTGTCTCTTA570.5447768326483801No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT540.5161043677721495No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTACCACGTGAATCTGTACTT460.4396444614355347No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTT410.3918570199751505No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTTAAGC360.3440695785147663No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACCT260.24849469559399792No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT250.23893720730192108No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTACCACGTGAATCTGTACTT250.23893720730192108No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAATCTGTACTT240.2293797190098442No Hit
CGGAAGGATCATTACCACACCTAAAAACCTATCCACGTGAACCGTTAAGC230.21982223071776735No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTT230.21982223071776735No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGATCTGTACTT230.21982223071776735No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGTCTGTACTT220.21026474242569052No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC220.21026474242569052No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTTAATCTGTACTT220.21026474242569052No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTC200.19114976584153684No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCGCGTGAATCTGTACTT180.17203478925738316No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGACCCGTTAAGC170.16247730096530633No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGCGAATCTGTACTT160.1529198126732295No Hit
CGGAAGGATCATTACCACACCTAAAGAACTTCCACGTGAACTGTATCAAC160.1529198126732295No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAC150.14336232438115262No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCGAC140.13380483608907578No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAC130.12424734779699896No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCACCACGTGAATCTGTACTT130.12424734779699896No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTT120.1146898595049221No Hit
CGGAAGGATAATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT120.1146898595049221No Hit
CGGAAGGATCATTACCACACCTAGAAAACTTCCACGTGAACTGTATCAAC120.1146898595049221No Hit
CTGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT120.1146898595049221No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC120.1146898595049221No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTACCACGTGAATCTGTACTT110.10513237121284526No Hit
CGTAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT110.10513237121284526No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAATCTGTACTT110.10513237121284526No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGCGAACTGTATCAAC110.10513237121284526No Hit
CGGAAGGATCATTACCACACCGAAAAAACTTACCACGTGAATCTGTACTT110.10513237121284526No Hit
CGGAAGGATCATTACCACACCTAAAAGACTTCCACGTGAACTGTATCAAC110.10513237121284526No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCACGTGAACTGTATCAAC110.10513237121284526No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)