FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve805.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve805.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5031
Sequences flagged as poor quality0
Sequence length301
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA207041.14490161001789No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC78015.503875968992247No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCATCCCACGTGAATTCGTAC2444.84993043132578No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCTATACCG1232.4448419797257004No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC1212.4050884516000797No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTAACGAGATCTC951.8882925859670046No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT901.7889087656529516No Hit
CGGAAGGATCATTACCACATCTCAGCAGTGGATGTCTAGGCTCTGTCTCT671.3317431922083085No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT641.2721129000198768No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTATCCACGTGAACCGTTGAAT631.2522361359570662No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCTGTACTG581.1528523156430133No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCATCCCCCGTGAATTCGTAC320.6360564500099384No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC240.4770423375074538No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCTATACCG220.4372888093818327No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA210.41741204531902204No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTACATAC200.39753528125621146No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC200.39753528125621146No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA200.39753528125621146No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT200.39753528125621146No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTACATACC200.39753528125621146No Hit
CGGAAGGATCATTACCACACCAAAAAACTACCCACGTGAACCGTTACATA170.33790498906777977No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGTACCGAGATCTC140.278274696879348No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTACATA140.278274696879348No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC130.2583979328165375No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACGTA120.2385211687537269No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAC120.2385211687537269No Hit
CGGAAGGATCATTACCACACCAAAAGACTATCCACGTGAACCGTTACATA120.2385211687537269No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAGCCGTTACATA110.21864440469091634No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTTAACCGTTACATA110.21864440469091634No Hit
CGGAAGGATCATTACCACGCCAAAAAACTATCCACGTGAACCGTTACATA100.19876764062810573No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACAGTTACATA90.17889087656529518No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC90.17889087656529518No Hit
CGGAAGGATCATTACCACACCGAAAAACTATCCACGTGAACCGTTACATA90.17889087656529518No Hit
CGGAAGGATCATTACAACACCAAAAAACTATCCACGTGAACCGTTACATA90.17889087656529518No Hit
CGGAAGGATCATTACCACCAAAAAAACTTTCCACGTGAACCTATACCGTT90.17889087656529518No Hit
CGGAAGGATCATTACCACACCAAACAACTATCCACGTGAACCGTTACATA80.1590141125024846No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC80.1590141125024846No Hit
CGGAATGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA80.1590141125024846No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGCGAACCGTTACATA80.1590141125024846No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTATCCACGTGAACCGTTACAT80.1590141125024846No Hit
CGGAAGGATCATTACCACACCAGAAAACTATCCACGTGAACCGTTACATA80.1590141125024846No Hit
CGGAAGGATTATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA80.1590141125024846No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCATCCCACGTGACTTCGTAC80.1590141125024846No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTACATA80.1590141125024846No Hit
CGGAAGGATCATTACCACACCAAAGAACTATCCACGTGAACCGTTACATA70.139137348439674No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTATCAAC70.139137348439674No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTACATA70.139137348439674No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTCTCCACGTGAACCGTTGAAT70.139137348439674No Hit
CGGAAGTATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA70.139137348439674No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA70.139137348439674No Hit
CGGAAGGATCATTACCAAACCAAAAAACTATCCACGTGAACCGTTACATA60.11926058437686345No Hit
CGGAAGGATAATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA60.11926058437686345No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCATGTGAACCGTTACATA60.11926058437686345No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACCCTGTACTG60.11926058437686345No Hit
CGGAAGGATCATTACCACACCAAAAAACTATTCACGTGAACCGTTACATA60.11926058437686345No Hit
CTGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA60.11926058437686345No Hit
CGGAAGGATCATTACCACACCAAAAAACCTCATCCCACGTGAATTCGTAC60.11926058437686345No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTATCCACGTGACCCGTTGAAT60.11926058437686345No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTACATA60.11926058437686345No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)