FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve801.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve801.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5497
Sequences flagged as poor quality0
Sequence length301
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG247344.988175368382755No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT4768.659268692013827No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTG4688.513734764416956No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTG1051.9101327997089321No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT771.4007640531198835No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTCAATA741.346188830271057No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTGT721.3098053483718393No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA711.2916136074222304No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA681.2370383845734036No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC591.0733127160269238No Hit
CGGAAGGATCATTACCACGGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA561.018737493178097No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT520.9459705293796616No Hit
CGGAAGGATCATTACCACTTGCAGCAGTGGATGTCTAGGCTCTGTCTCTT480.8732035655812261No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC380.6912861560851373No Hit
CGGAAGGATCATTACCACCTCCAGCAGTGGATGTCTAGGCTCTGTCTCTT380.6912861560851373No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTGGTA330.600327451337093No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTGTT300.5457522284882663No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT300.5457522284882663No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTG260.4729852646898308No Hit
CGGAAGGATCATTACCACACCAATAAAACTTACCACGTGAATCTGTACTG250.45479352374022197No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA230.41841004184100417No Hit
CGGAAGGATCATTACCAAACCAAAAAAACTTACCACGTGAATCTGTACTG200.3638348189921775No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGTCTGTACTG180.3274513370929598No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGATCTGTACTG180.3274513370929598No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATATGTACTG170.3092595961433509No Hit
CGGAAGGATCATTACCACACCCGGGATCCTCGATCTTTCTCCTAGGTTAA140.25468437329452426No Hit
CGGAAGGATAATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG130.2364926323449154No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG130.2364926323449154No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT130.2364926323449154No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTG120.21830089139530653No Hit
CGGAAGGATCATTACCACACAAAAAAAACTTACCACGTGAATCTGTACTG120.21830089139530653No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTTAATCTGTACTG120.21830089139530653No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTGCTG120.21830089139530653No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGCGAATCTGTACTG100.18191740949608876No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTG100.18191740949608876No Hit
CGGAAGGATTATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG80.14553392759687103No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTACCACGTGAATCTGTACTG80.14553392759687103No Hit
CGGAAGGATCATACCACACCAAAAAAACTTACCACGTGAATCTGTACTGT80.14553392759687103No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCTGTACTG80.14553392759687103No Hit
TGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG80.14553392759687103No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG80.14553392759687103No Hit
CGGAAGGATCATTACCACACCAAAGAAACTTACCACGTGAATCTGTACTG80.14553392759687103No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACCG80.14553392759687103No Hit
CGGAAGGATCATTACCCCACCAAAAAAACTTACCACGTGAATCTGTACTG80.14553392759687103No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGATTCTGTACTG70.12734218664726213No Hit
CGGAAGGATCATTACCACACCGATCCAAGATCTTTTTCACCGCGAACCGT70.12734218664726213No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAATCTGTACTG70.12734218664726213No Hit
CGTAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG70.12734218664726213No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCACCACGTGAATCTGTACTG70.12734218664726213No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC70.12734218664726213No Hit
CGGAAGGATCATTACCACACCAAGAAAACTTACCACGTGAATCTGTACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTGCCACGTGAATCTGTACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTACCACGTGACTCTGTACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGCACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTATTG60.10915044569765327No Hit
CTGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACCTCCAGCAGTGGATGTCTCGGCTCTGTCTCTT60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAACTTCCCACGTGAATCTGTACTGT60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGTATCTGTACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTAAATCTGTACTG60.10915044569765327No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC60.10915044569765327No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)