FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve800.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve800.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5985
Sequences flagged as poor quality0
Sequence length301
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT149324.945697577276523No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA108918.195488721804512No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA5709.523809523809524No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA4747.919799498746867No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT2744.578111946532999No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAATCAA2444.076858813700919No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA1792.990810359231412No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT721.2030075187969926No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA611.0192147034252297No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT601.0025062656641603No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA480.8020050125313283No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTT420.7017543859649122No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAAAT420.7017543859649122No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA410.685045948203843No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA340.5680868838763575No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC300.5012531328320802No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA220.36758563074352546No Hit
CGGAAGGATCATTACCACACCTTAAAACTATCCACGTGAACCGTTTGTAC190.31746031746031744No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTCAAAA180.30075187969924816No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT180.30075187969924816No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTTACCACGTGAATCTGTACTT180.30075187969924816No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTCAAAAAA160.2673350041771094No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC150.2506265664160401No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA140.23391812865497078No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTCAAAA130.2172096908939014No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAACCAA120.20050125313283207No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC110.18379281537176273No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCTACGTGAACCGTCAAAA100.1670843776106934No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACCT100.1670843776106934No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTT100.1670843776106934No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGATTCTGTACTT80.1336675020885547No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTC80.1336675020885547No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAGCCAA80.1336675020885547No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT80.1336675020885547No Hit
CGGAAGGATCATTACCACACCGAAAAAACTTACCACGTGAATCTGTACTT80.1336675020885547No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA80.1336675020885547No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAGCCGTTAACCAA80.1336675020885547No Hit
CGGAAGGATCATTACCACGCCAAAAGCTATCCACGTGAACCGTTAACCAA80.1336675020885547No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTATCCACGTGAACCGTCAAAA70.11695906432748539No Hit
CGGAAGGATCATTACCACCAAAAAAACTATCCACGTGAACCGTCAAAAAA70.11695906432748539No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT70.11695906432748539No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAATCTGTACTTTC70.11695906432748539No Hit
CGGAAGGATCATTACCACACCAAAAAGACTTACCACGTGAATCTGTACTT70.11695906432748539No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTACCACGTGAATCTGTACTT60.10025062656641603No Hit
CGGAAGGATCATTACCACACCAAAAGAACTTACCACGTGAATCTGTACTT60.10025062656641603No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTT60.10025062656641603No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGACTCTGTACTT60.10025062656641603No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCTGTACTT60.10025062656641603No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTTAACCGTTAACCAA60.10025062656641603No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCGCGTGAATCTGTACTT60.10025062656641603No Hit
CGGAAGGATCATTACCACGCCTAAAACTATCCACGTGAACCGTTAACCAA60.10025062656641603No Hit
CGGAAGGATCATTACCACACCAAAAAGACTATCCACGTGAACCGTCAAAA60.10025062656641603No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)