FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve799.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve799.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21272
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT1400065.81421587062806No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC382417.976682963520123No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCTTTGTA2120.9966152688980819No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA1570.7380594208349004No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT940.4418954494170741No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGCTTTGTAT750.3525761564497932No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT560.2632568634825122No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCGCTTTGTAT550.25855584806318166No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT540.25385483264385106No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT540.25385483264385106No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCGCTTTGTAT540.25385483264385106No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGCTTTGTA520.2444528018051899No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCGCTTTGTAT500.2350507709665288No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT470.22094772470853705No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCGCTTTGTAT440.2068446784505453No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCCTTGTAT400.188040616773223No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCGCTTTGTAT400.188040616773223No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCGCTTTGTAT390.18333960135389243No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCGCTTTGTAT390.18333960135389243No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCGCTTTGTAT380.17863858593456186No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT360.16923655509590071No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTTTGTAT360.16923655509590071No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACA350.16453553967657014No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCGCTTTGTAT340.15983452425723957No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCGCTTTGTAT340.15983452425723957No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCGCTTTGTAT330.155133508837909No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCGCTTTGTATTG330.155133508837909No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTCTGTAT320.15043249341857842No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCGCTTTGTAT290.1363294471605867No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTCGTAT290.1363294471605867No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAC280.1316284317412561No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGCAT260.12222640090259496No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAGCTTTGTAT250.1175253854832644No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCGCTTTGTAT250.1175253854832644No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT250.1175253854832644No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC230.10812335464460324No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTGT230.10812335464460324No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)