FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve798.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve798.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3397
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT202059.464233146894315No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT2336.858993229319989No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGATCTACGATCTC1223.5914041801589636No Hit
CGGAAGGATCATTACCACCTCCAGCAGTGGATGTCTAGGCTCTGTCTCTT1093.208713570797763No Hit
CGGAAGGATCATTACCACATCTCCGCAGCAGTGGATGTCTAGGCTCTGTC932.737709743891669No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT611.7957020900794818No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA531.560200176626435No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC200.588754783632617No Hit
CGGAAGGATCATTACCACATCTCCGCAGCAGTGGATGTCTCGGCTCTGTC180.5298793052693553No Hit
CGGAAGGATCATTACCACACCAGAAACTATCCACGTGAACCACTTTGTAT170.5004415660877244No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG150.44156608772446276No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT140.41212834854283187No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCACTTTGTAT120.3532528701795702No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT110.32381513099793935No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT110.32381513099793935No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT90.26493965263467767No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCACTTTGTAT90.26493965263467767No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT80.23550191345304683No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT80.23550191345304683No Hit
CGGAAGGATCATTACCACCTCCAGCAGTGGATGTCTCGGCTCTGTCTCTT70.20606417427141593No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT70.20606417427141593No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT70.20606417427141593No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT70.20606417427141593No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT70.20606417427141593No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT60.1766264350897851No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC60.1766264350897851No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGATCTCCGATCTC60.1766264350897851No Hit
CGGAAGGATCATTACCCCACCAAAAACTATCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATCATTACCACACCGAAAACTATCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT60.1766264350897851No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT50.14718869590815425No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC50.14718869590815425No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.14718869590815425No Hit
CGGAAGGATCATTACCACACCAAAAACTATTCACGTGAACCACTTTGTAT40.11775095672652341No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT40.11775095672652341No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACGATCTACGAACTC40.11775095672652341No Hit
CGGAAGGATCATTACCACATCCCCGAGCCCACGAGACCAGCAGTGGATGT40.11775095672652341No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT40.11775095672652341No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT40.11775095672652341No Hit
CGGAAGGATCATTACCACATCTCCTCAGCAGTGGATGTCTAGGCTCTGTC40.11775095672652341No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT40.11775095672652341No Hit
GGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTATT40.11775095672652341No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCCCTTTGTAT40.11775095672652341No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT40.11775095672652341No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA40.11775095672652341No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT40.11775095672652341No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.11775095672652341No Hit
CGGAAGGATCATTACCAACTCCAGCAGTGGATGTCTAGGCTCTGTCTCTT40.11775095672652341No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)