FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve795.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve795.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4591
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC251454.759311696798086No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGAACTGTATCA57112.43737747767371No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT1643.572206490960575No Hit
CGGAAGGATCATTACCACCGTCAGCAGTGGATGTCTAGGCTCTGTCTCTT901.960357220649096No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC901.960357220649096No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGCACTGTATCA801.7425397516880854No Hit
CGGAAGGATCATTACCACATCTCCGGCCCACGAGACCAGCAGTGGATGTC681.4811587889348725No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC440.958396863428447No Hit
CGGAAGGATCATTACCACACCTAAAAACACTTTCCACGTGAACTGTATCA300.653452406883032No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC210.4574166848181224No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC180.3920714441298192No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC180.3920714441298192No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGAACCGTATCA160.3485079503376171No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC160.3485079503376171No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC150.326726203441516No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTATCAA140.3049444565454149No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC120.2613809627532128No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC120.2613809627532128No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC120.2613809627532128No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC110.23959921585711175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC110.23959921585711175No Hit
CGGAAGGATCATTACCACCTAAAAAAACTTTCCACGTGAACTGTATCAAC100.21781746896101067No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC100.21781746896101067No Hit
CGGAAGGATCATTACCCCACCTAAAAACTTTCCACGTGAACCGTATCAAC100.21781746896101067No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC90.1960357220649096No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC90.1960357220649096No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC90.1960357220649096No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC90.1960357220649096No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC80.17425397516880856No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC80.17425397516880856No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC80.17425397516880856No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC80.17425397516880856No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC80.17425397516880856No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC70.15247222827270746No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC70.15247222827270746No Hit
CGGAAGGATCATTACCACATCTCCGGCCCACGAGACCAGCCGTGGATGTC70.15247222827270746No Hit
CGGAAGGACCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.15247222827270746No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC70.15247222827270746No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.15247222827270746No Hit
CGGAAGGATCATTACCACACCTAAAAACACTTTCCACGTGCACTGTATCA60.1306904813766064No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC60.1306904813766064No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC60.1306904813766064No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC60.1306904813766064No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGAACTGTATTA60.1306904813766064No Hit
CGGAAGGATCATTACTACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.1306904813766064No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC60.1306904813766064No Hit
CGGAAGGATCATTATCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.1306904813766064No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC60.1306904813766064No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGTACTGTATCA50.10890873448050534No Hit
CGGAAGGATCATTACCACACCTAAAACCTTTCCACGTGAACCGTATCAAC50.10890873448050534No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC50.10890873448050534No Hit
CGGAAGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACC50.10890873448050534No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC50.10890873448050534No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.10890873448050534No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)