FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve790.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve790.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7086
Sequences flagged as poor quality0
Sequence length301
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA219030.90601185436071No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC177225.007056167090035No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT82211.600338696020323No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA3114.388935930002822No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAAGCAA1622.2861981371718882No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA911.284222410386678No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT861.213660739486311No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTCAAAA711.0019757267852103No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA650.91730172170477No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA490.6915043748235958No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTCAAAA410.5786057013830087No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTATCAA340.4798193621224951No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT330.46570702794242164No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAGAA290.4092576912221282No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA280.3951453570420547No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC260.36692068868190797No Hit
CGGAAGGATCATTACCACCAAAAAAACTATCCACGTGAACCGTCAAAAAA210.29635901778154106No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA200.28224668360146765No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGACCCGTCAAAA190.2681343494213943No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC140.19757267852102736No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTATCAAC130.18346034434095398No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGCGAACCGTCAAAA120.1693480101608806No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC120.1693480101608806No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGCCAAAA110.15523567598080723No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC110.15523567598080723No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGGACCGTCAAAA100.14112334180073383No Hit
CGGAATGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT100.14112334180073383No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTAAAAA100.14112334180073383No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC90.12701100762066045No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCAAAAA90.12701100762066045No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA90.12701100762066045No Hit
CGGAAGTATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA90.12701100762066045No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAGCCGTCAAAA90.12701100762066045No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC80.11289867344058707No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCAGAAA80.11289867344058707No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC80.11289867344058707No Hit
CGGAAGGATCATTACCACACCAAAAGAACTATCCACGTGAACCGTCAAAA80.11289867344058707No Hit
CGGAAGGATCATTACCACACCAAAAAACCTCTCCACGTGAACCGTCAAAA80.11289867344058707No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAGAA80.11289867344058707No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC80.11289867344058707No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCATAAAT80.11289867344058707No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)