FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1389
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC27920.086393088552914No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA20915.046796256299496No Hit
CGGAAGGATCATTACCACACCAGCAGTGGATGTCTAGGCTCTGTCTCTTA1208.639308855291576No Hit
CGGAAGGATCATTACCACATACGGCCGACAGCAGTGGATGTCTAGGCTCT1077.703383729301656No Hit
CGGAAGGATCATTACCACTTCTTTACAGCAGTGGATGTCTAGGCTCTGTC936.695464362850973No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT725.183585313174946No Hit
CGGAAGGATCATTACCACATCTCCGAGCCAGCAGTGGATGTCTAGGCTCT674.82361411087113No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA221.5838732901367891No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC211.511879049676026No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA141.0079193664506838No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC130.9359251259899208No Hit
CGGAAGGATCATTACCACTTCTTTACAGCAGTGGATGTCTCGGCTCTGTC100.7199424046076314No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC70.5039596832253419No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA60.4319654427645789No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTCTAAGAGACA50.3599712023038157No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.3599712023038157No Hit
CGGAAGGAGCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA40.28797696184305255No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATGAGAGACA40.28797696184305255No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTATGCTCTGTC40.28797696184305255No Hit
CGGAAGGATCATTACCACTCGCCGGCAGCAGTGGATGTCTAGGCTCTGTC30.21598272138228944No Hit
CGGAAGGATCATTACCACTCGTCAGCAGCAGTGGATGTCTAGGCTCTGTC30.21598272138228944No Hit
CGGAAGGATCATTACCACTCGTCCGCAGCAGTGGATGTCTAGGCTCTGTC30.21598272138228944No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCCCTGTCTCTTA30.21598272138228944No Hit
CGGAAGGATCATTACCACTCGTCGACAGCAGTGGATGTCTAGGCTCTGTC30.21598272138228944No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA30.21598272138228944No Hit
CGGAAGGATCATTACCACACGTCGGCAGCAGTGGATGTCTAGGCTCTGTC30.21598272138228944No Hit
CGGAAGGATCATTACCACATAAGCAGTGGATGTCTAGGCTCTGTCTCTTA30.21598272138228944No Hit
CGGAAGGATCATTACCACATACGGCCGGCAGCAGTGGATGTCTAGGCTCT20.14398848092152627No Hit
CGGAAGGATCATTACCAAATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA20.14398848092152627No Hit
CCGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGCCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACATACGTCCGACAGCAGTGGATGTCTAGGCTCT20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATCAGAGACA20.14398848092152627No Hit
CGGAAGGATCATTACCACACCAGCAGTGGATGTCTAGGCACTGTCTCTTA20.14398848092152627No Hit
CGGAAGGATCATTACCACGTCGGCAGCCGTGGATGTCTAGGCTCTGTCTC20.14398848092152627No Hit
CGGAAGTATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACATCAGCAGTTGATGTCTAGGCTCTGTCTCTTA20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCGCTGCC20.14398848092152627No Hit
CGTAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTAGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATTATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGTCTGTCT20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGAAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACATCTCCTAGCCAGCAGTGGATGTCTAGGCTCT20.14398848092152627No Hit
CGGAAGGATCATTACCACTCCTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACTCTTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACAACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTA20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTTGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGGCAGATGTGTATAAGAGGCA20.14398848092152627No Hit
CGGAAGGATCATTACAAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC20.14398848092152627No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCATCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCAATCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACATCTCAGAGCCAGCAGTGGATGTCTAGGCTCT20.14398848092152627No Hit
CGGAAGGATCATTACCAGATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA20.14398848092152627No Hit
CGGAAGGATCATTACCACATAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC20.14398848092152627No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTTTCTTA20.14398848092152627No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAGGAGACA20.14398848092152627No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)