FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve782.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve782.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3331
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC201560.49234464124888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA37311.197838486940858No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1163.4824377063944763No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTTTCAAC611.8312818973281297No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTTTCAAC391.1708195737015912No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT290.8706094265986191No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTTTCAAC230.6904833383368358No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTCCAAC220.6604623236265386No Hit
CGGAAGGATCATTACCACATCTCCAGCAGTGGATGTCTAGGCTCTGTCTC120.3602521765235665No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTTTCAAC120.3602521765235665No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC110.3302311618132693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTTTCAAC110.3302311618132693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTTTCAAC110.3302311618132693No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTTTCAAC110.3302311618132693No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC110.3302311618132693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAGC110.3302311618132693No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT110.3302311618132693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTTTCAAC110.3302311618132693No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTTTCAAC100.3002101471029721No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTTTCAAC100.3002101471029721No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCTTCAAC100.3002101471029721No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACTGTTTCAAC90.2701891323926749No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC80.24016811768237767No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTTTCAACCA80.24016811768237767No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCTCAAC80.24016811768237767No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTTTCAAC80.24016811768237767No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC80.24016811768237767No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTTTCAAC70.21014710297208045No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGTACCGTTTCAAC70.21014710297208045No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCGAC70.21014710297208045No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAA60.18012608826178325No Hit
CGGAAGGATCATTACCACCCCTAAAAACTTTCCACGTGAACCGTTTCAAC60.18012608826178325No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTTTCAAC60.18012608826178325No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTTTCAAC60.18012608826178325No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTTTCAAC60.18012608826178325No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA50.15010507355148606No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCATGTGAACCGTTTCAAC50.15010507355148606No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC50.15010507355148606No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTTAAC50.15010507355148606No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA50.15010507355148606No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA50.15010507355148606No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTTTCAAC50.15010507355148606No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC50.15010507355148606No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTAAAC50.15010507355148606No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGATTCAAC50.15010507355148606No Hit
CGGAAGGATCATTCCACACCTAAAAACTTTCCACGTGAACCGTTTCAACC40.12008405884118883No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTTTCAAC40.12008405884118883No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC40.12008405884118883No Hit
CGGAAAGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC40.12008405884118883No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTTTCAAC40.12008405884118883No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)