FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve779.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve779.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1312
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC25319.283536585365855No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT17713.490853658536587No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA1148.689024390243901No Hit
CGGAAGGATCATTACCACCGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA765.7926829268292686No Hit
CGGAAGGATCATTACCACATCTCAGCAGTGGATGTCTAGGCTCTGTCTCT695.259146341463414No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC675.1067073170731705No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT644.878048780487805No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC614.649390243902439No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGCAGTGGATGTCTAGGCTC342.591463414634146No Hit
CGGAAGGATCATTACCACATCTGACAGCAGTGGATGTCTAGGCTCTGTCT272.057926829268293No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA201.524390243902439No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCAGCAGTGGATGTCTAGGCT141.0670731707317074No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC130.9908536585365854No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA60.45731707317073167No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.38109756097560976No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTCGGCTCTGTCTCTT50.38109756097560976No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.38109756097560976No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCCCTGTCTC40.3048780487804878No Hit
CGGAAGGATCATTACCACCTCAGCAGTGGATGTCTAGGCTCTGTCTCTTA30.22865853658536583No Hit
CGGAAGGATCATTACCACTCGTCGGAAGCAGTGGATGTCTAGGCTCTGTC30.22865853658536583No Hit
CGGAAGGATCATTACCAATCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT30.22865853658536583No Hit
CGGAAGGATCATTACCACTCGTCTGCAGCAGTGGATGTCTAGGCTCTGTC30.22865853658536583No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCGGTC20.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTTAGGCTCTGTCT20.1524390243902439No Hit
CGGAAGGATCATTACCACATCTCCTAGCCCAGCAGTGGATGTCTAGGCTC20.1524390243902439No Hit
CGGAAGGATCATTACCACCGCAGCAGTGTATGTCTAGGCTCTGTCTCTTA20.1524390243902439No Hit
CGGAAGGATTATTACCACATCTCAGCAGTGGATGTCTAGGCTCTGTCTCT20.1524390243902439No Hit
CGGAAGGATCATTACCACAGCAGTTGATGTCTAGGCTCTGTCTCTTATAC20.1524390243902439No Hit
CGGAAGGATCATTACCACATCTCAGCAGTGGATGTCTAGGCTCTGTTCTT20.1524390243902439No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAC20.1524390243902439No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC20.1524390243902439No Hit
CGGAAGGATCATTACCACTAAGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.1524390243902439No Hit
CGTAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT20.1524390243902439No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCCTTATA20.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGACTCTGTC20.1524390243902439No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCCCTTATAC20.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCGCTGTC20.1524390243902439No Hit
CGGAAGGATCATTACAACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.1524390243902439No Hit
CGGAAGGATCATTACCACTCAGCAGTTGATGTCTAGGCTCTGTCTCTTAT20.1524390243902439No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTTCTTATACA20.1524390243902439No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA20.1524390243902439No Hit
CTGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.1524390243902439No Hit
CGGAATGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT20.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTTGGCTCTGTC20.1524390243902439No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTAGCAGCTATCTC20.1524390243902439No Hit
CGGAAGGATCATTACCACTCCGCAGTGGATGTCTAGGCTCTGTCTCTTAT20.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGTTCTGTC20.1524390243902439No Hit
CGGAAGGATCATTACCACATCACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1524390243902439No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGCTCTGTCT20.1524390243902439No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)