FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve777.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve777.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86
Sequences flagged as poor quality0
Sequence length301
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA3136.04651162790697No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA66.976744186046512No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT55.813953488372093No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC55.813953488372093No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT44.651162790697675No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC33.488372093023256No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTGGTA22.3255813953488373No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT22.3255813953488373No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA22.3255813953488373No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC22.3255813953488373No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC22.3255813953488373No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTGAACA11.1627906976744187No Hit
CGGAAGGATCATTACCACGAGACCAACAGTGGATGTCTAGGCTCTGTCTC11.1627906976744187No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTAAACA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAAACA11.1627906976744187No Hit
CGGAAGGATCATTACCACCCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT11.1627906976744187No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA11.1627906976744187No Hit
GGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC11.1627906976744187No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT11.1627906976744187No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA11.1627906976744187No Hit
AGACCTGGGATGTACATCGGGTCCACCAGCGCGCGCGGGCTCCACCACCT11.1627906976744187No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTATCCACGTGAACCGTTGAAT11.1627906976744187No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCTAAAACCATCCACGGGAACCGTCAGAAAT11.1627906976744187No Hit
CGGAAGGATCATTACAACACCAAAAAACTATCAACGTGAACCGTTAAACA11.1627906976744187No Hit
TGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA11.1627906976744187No Hit
CGGAAGGATCATTACCACACCAAAAACAATCAACGTGAACAGTCAGAAAT11.1627906976744187No Hit
CGGAAGGATCATTACCACGAGCAGCAGTTGATGTCTAGGCTCTGTCTCTT11.1627906976744187No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTATCAAAC11.1627906976744187No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)