FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve775.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve775.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2390
Sequences flagged as poor quality0
Sequence length301
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC94339.45606694560669No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC47419.8326359832636No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCACGTGAACTGTATCGAC2028.451882845188283No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA1687.029288702928871No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT783.2635983263598325No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCACGTGAACTGTATCAAC471.9665271966527196No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCGAC331.380753138075314No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC251.0460251046025104No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAC190.7949790794979079No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC160.6694560669456067No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA130.5439330543933054No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA110.46025104602510464No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC70.2928870292887029No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC60.2510460251046025No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCGAC50.20920502092050208No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC50.20920502092050208No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC50.20920502092050208No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC40.16736401673640167No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCACGTGAACTGTATTGAC40.16736401673640167No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTCCACGTGAACTGTATCGAC40.16736401673640167No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC40.16736401673640167No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA40.16736401673640167No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAC40.16736401673640167No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC40.16736401673640167No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC40.16736401673640167No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC40.16736401673640167No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTCCACGTGAACTGTATCAAC30.12552301255230125No Hit
CGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAACA30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCGCGTGAACTGTATCAAC30.12552301255230125No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAC30.12552301255230125No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACTGTATCGACA30.12552301255230125No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCGACA30.12552301255230125No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAACA30.12552301255230125No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTCCACGTGAACTGTATCGAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAC30.12552301255230125No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC30.12552301255230125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)