FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve773.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve773.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11202
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA476642.54597393322621No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA334329.842885199071596No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT9068.0878414568827No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAA690.6159614354579539No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC540.48205677557579No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT500.4463488662738797No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT450.4017139796464917No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT370.33029816104267096No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTACATA340.3035172290662382No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT320.28566327441528294No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT310.2767362970898054No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTATCAAA310.2767362970898054No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC290.25888234243885017No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA260.23210141046241742No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTACATA250.22317443313693985No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA250.22317443313693985No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAGAAA230.20532047848598461No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA220.19639350116050705No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA210.18746652383502946No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA210.18746652383502946No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTACATA200.17853954650955187No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA200.17853954650955187No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA190.16961256918407427No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA190.16961256918407427No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAGCCGTTACATA170.1517586145331191No Hit
CGGAAGGATCATTACCACACCAAAAAACTACCCACGTGAACCGTTACATA170.1517586145331191No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA170.1517586145331191No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA160.14283163720764147No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA160.14283163720764147No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGCGAACCGTTACATA150.1339046598821639No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTTAACCGTTACATA150.1339046598821639No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG150.1339046598821639No Hit
CGGAAGGATCATTACCACACCAAAAAACTGTCCACGTGAACCGTTACATA140.12497768255668631No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGCTACATA140.12497768255668631No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAA140.12497768255668631No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA140.12497768255668631No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGA130.11605070523120871No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTACATAC130.11605070523120871No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC130.11605070523120871No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAA130.11605070523120871No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC130.11605070523120871No Hit
CGGAAGGATAATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA130.11605070523120871No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA130.11605070523120871No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA130.11605070523120871No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAAAC120.10712372790573112No Hit
CGGAATGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA120.10712372790573112No Hit
CGGAAGGATCATTACCACGCCAAAAAACTATCCACGTGAACCGTTACATA120.10712372790573112No Hit
CGGAAGTATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA120.10712372790573112No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA120.10712372790573112No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)