FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve771.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve771.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10792
Sequences flagged as poor quality0
Sequence length301
%GC46

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC248122.989251297257226No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA186917.318383988139363No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT140313.000370644922166No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT134912.5No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT4724.373610081541883No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA2532.344329132690882No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC2302.1312083024462565No Hit
CGGAAGGATCATTACCACTAAGAACAGCAGTGGATGTCTAGGCTCTGTCT890.8246849518161601No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA790.7320237212750185No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC720.6671608598962194No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC720.6671608598962194No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT620.5744996293550779No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC610.5652335063009637No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA590.5467012601927353No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCGTCAGAAAT560.5189028910303929No Hit
CGGAAGGATCATTACCACACCTAAAGACTTCCCCCGTGAACCGTATCAAC390.36137879911045223No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA360.3335804299481097No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCGTGAACCGTATCAACC220.2038547071905115No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGACCCGTATTCA190.17605633802816903No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAGCCGTCAGAAAT180.16679021497405486No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACTGTCGTTAT170.1575240919199407No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCGTTA170.1575240919199407No Hit
CGGAAGGATCATTACCACACCTAAAAACTCCCCCCGTGAACCGTATCAAC160.14825796886582654No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTACTCA150.1389918458117124No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC150.1389918458117124No Hit
CGGAATGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA150.1389918458117124No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGGACCGTATCAAC150.1389918458117124No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACTGTCGTTAT140.12972572275759822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC140.12972572275759822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAGCCGTATCAAC140.12972572275759822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATAAAC140.12972572275759822No Hit
CGGAAGGATAATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC130.12045959970348406No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACTGTCGTTAT130.12045959970348406No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTTAACCGTATCAAC130.12045959970348406No Hit
CGGAAGGATCATTACCACCTAAAAACTTCCCCCGTGAACCGTATCAACCC130.12045959970348406No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTTCCACGTGAACCGTATTCA120.1111934766493699No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGGACCGTCAGAAAT120.1111934766493699No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAGAT120.1111934766493699No Hit
CGGAAGGATCATTACCACGCCAAAAACAATCCACGTGAACCGTCAGAAAT110.10192735359525575No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCAGTGAACCGTATCAAC110.10192735359525575No Hit
CGGAAGGATCATTACCACCAAAAACAATCCACGTGAACCGTCAGAAATAG110.10192735359525575No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACTGTCGTTATTT110.10192735359525575No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGCGAACCGTATCAAC110.10192735359525575No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)