FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve768.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve768.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7361
Sequences flagged as poor quality0
Sequence length301
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA198927.02078521939954No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA121416.492324412443963No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAGCAA94512.837929629126476No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTTCAATA5036.833310691482136No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC2753.735905447629398No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA2603.5321287868496127No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAGC901.2226599646787122No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTCAAAA821.1139790789294934No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA761.032468414617579No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAAC520.7064257573699225No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA520.7064257573699225No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA470.6385002037766607No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT460.6249150930580084No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT430.5841597609020514No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA400.5434044287460943No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTCAAAA390.5298193180274419No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAGC300.4075533215595707No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC270.36679798940361363No Hit
CGGAAGGATCATTACCACCCACCCAGAGACAGCAGTGGATGTCTAGGCTC250.33962776796630895No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA250.33962776796630895No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC200.27170221437304715No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTCAAAAAA200.27170221437304715No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAATCAA160.2173617714984377No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGACCCGTCAAAA150.20377666077978535No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA140.190191550061133No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTTAACCGTCAAAA140.190191550061133No Hit
CGGAAGGATCATTACCACCAAAAAAACTATCCACGTGAACCGTCAAAAAA130.17660643934248063No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGACCCGTTAAGC120.1630213286238283No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTATCCACGTGAACCGTCAAAA120.1630213286238283No Hit
CGGAAGGATCATTACCAAACCAAAAAACTATCCACGTGAACCGTTAAACA110.14943621790517592No Hit
CGGAATGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA100.13585110718652357No Hit
CGGAAGGATCATTACCACACCAGAAAACTATCCACGTGAACCGTTAAACA100.13585110718652357No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGGACCGTCAAAA100.13585110718652357No Hit
CGGAAGGATCATTACCAAACCAAAAAAACTATCCACGTGAACCGTCAAAA100.13585110718652357No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCGCGTGAACCGTCAAAA100.13585110718652357No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAGA90.12226599646787122No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGCCAAAA90.12226599646787122No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCTGTACTGT90.12226599646787122No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA90.12226599646787122No Hit
CGGAAGGATCATTACCACACCAAGAAAACTATCCACGTGAACCGTCAAAA90.12226599646787122No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAATCGTTCAATA90.12226599646787122No Hit
CGGAAGTATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA80.10868088574921884No Hit
CGGAATGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA80.10868088574921884No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAACAA80.10868088574921884No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGAACCGTTAAAC80.10868088574921884No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGCGAACCGTTAAACA80.10868088574921884No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)