FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve767.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve767.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9954
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA445944.79606188466948No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA198719.96182439220414No Hit
CGGAAGGATCATTACCACACCTAAAAAAACGTCCACGTGAACTGTATCAA3453.4659433393610604No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA3243.25497287522604No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA2652.6622463331324093No Hit
CGGAAGGATCATTACCACACGTAAAAAAACGTCCACGTGAACTGTATCAA2492.501506931886679No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA1401.4064697609001406No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG1251.2557765722322685No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC1131.1352220212979707No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA950.954390194896524No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCGTTGTAA810.81374321880651No Hit
CGGAAGGATCATTACCACACCTAAAAAAACGTCCACGTGACCTGTATCAA370.37170986538075146No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTTGTAA360.3616636528028933No Hit
CGGAAGGATCATTACCACACGTAAAAAAACGTCCACGTGACCTGTATCAA350.35161744022503516No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTTAACTGTATCAAA300.3013863773357444No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTTGTAAT280.2812939521800281No Hit
CGGAAGGATCATTACCACACCTAAAAAACGTCCACGTGAACTGTATCAAA280.2812939521800281No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA250.25115531444645367No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAT220.22101667671287922No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA220.22101667671287922No Hit
CGGAATGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA210.21097046413502107No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTG210.21097046413502107No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGACCCGTTGTAA180.18083182640144665No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAGCCGTTGTAA180.18083182640144665No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTTAACCGTTGTAA170.1707856138235885No Hit
CGGAAGGATAATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA170.1707856138235885No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAG170.1707856138235885No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTTCCACGTGAACCGTTGTAA160.16073940124573036No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATCAAA150.1506931886678722No Hit
CGGAAGGATCATTACCACACCTAAAAAGCTTCCACGTGAACTGTATCAAA150.1506931886678722No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTACCAAA150.1506931886678722No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAA150.1506931886678722No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA150.1506931886678722No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGCGAACTGTATCAAA150.1506931886678722No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTCCACGTGAACTGTATCAAA140.14064697609001406No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATAAAA140.14064697609001406No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC140.14064697609001406No Hit
CGGAAGGATCATTACAACACCTAAAAAACTTCCACGTGAACTGTATCAAA130.1306007635121559No Hit
CGGAAGGATCATTACCACACCTAAAAACACGTCCACGTGAACTGTATCAA130.1306007635121559No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATCAAA130.1306007635121559No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCGCGTGAACTGTATCAAA120.12055455093429776No Hit
CGGAAGGATCATTACCACACGTAAAAACACGTCCACGTGAACTGTATCAA120.12055455093429776No Hit
CGGAAGGATCATTACCAAACCAAAAAAACTTTCCACGTGAACCGTTGTAA110.11050833835643961No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA100.10046212577858146No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGGACCGTTGTAA100.10046212577858146No Hit
CGGAAGGATCATACCACACCTAAAAAACTTCCACGTGAACTGTATCAAAA100.10046212577858146No Hit
TGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA100.10046212577858146No Hit
CTGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA100.10046212577858146No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGCATCAAA100.10046212577858146No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTCCACGTGAACTGTATCAAA100.10046212577858146No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC100.10046212577858146No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)