FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve765.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve765.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28126
Sequences flagged as poor quality0
Sequence length301
%GC45

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT2496788.76839934580104No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT1140.40531892199388464No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT930.33065491004764275No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT900.3199886226267511No Hit
CGGAAGGATAATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT740.26310175638199534No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCGCTTTGTAT680.2417691815402119No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCGCTTTGTAT660.23465832325961744No Hit
CGTAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT660.23465832325961744No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCGCTTTGTAT650.2311028941193202No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT620.2204366066984285No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCGCTTTGTAT600.21332574841783403No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCCTTGTAT590.2097703192775368No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT580.20621489013723956No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCGCTTTGTAT580.20621489013723956No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCGCTTTGTAT560.1991040318566451No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCGCTTTGTAT560.1991040318566451No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAGCTTTGTAT560.1991040318566451No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCGCTTTGTAT550.19554860271634786No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTTTGTAT500.1777714570148617No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT490.17421602787456447No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCGCTTTGTAT440.1564388821730783No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT420.14932802389248384No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTCGTAT420.14932802389248384No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCGCTTTGTAT390.13866173647159213No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCGCTTTGTATT360.12799544905070043No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTCTGTAT350.12444001991040318No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACTGCTTTGTAT340.12088459077010595No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAC320.11377373248951149No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGATTTGTAT320.11377373248951149No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCGCTTTGTAT320.11377373248951149No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTAAACCGCTTTGTAT320.11377373248951149No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCGCTTTGTAT300.10666287420891701No Hit
CGGAAGGATCATTATCACACCAAAAACTATCCACGTGAACCGCTTTGTAT300.10666287420891701No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)