FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OODve763.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OODve763.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7894
Sequences flagged as poor quality0
Sequence length301
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT324341.08183430453509No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA184323.34684570559919No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGTCAAAA2332.9516088168229033No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA2172.7489232328350646No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1592.0141879908791487No Hit
CGGAAGGATCATTACCACAACAGCAGTGGATGTCTAGGCTCTGTCTCTTA1201.5201418799087916No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGCTTTGT1191.5074740309095516No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT991.254117050924753No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTTTAATA801.0134279199391942No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAACCGTCAAAA770.9754243729414744No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGAACCGTCAAAA640.8107423359513555No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA470.5953889029642767No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCGCTTTGTAT420.532049657968077No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTCAAAAA410.5193818089688371No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCGCTTTGTATTG370.4687104129718774No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGACCCGTCAAAA280.354699771978718No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTTTGTAT250.31669622498099825No Hit
CGGAAGGATCATTACCACCAAAAAAACTATCCACGTGAACCGTCAAAAAA230.29136052698251835No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTATCCACGTGAACCGTCAAA200.25335697998479856No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT190.24068913098555864No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT190.24068913098555864No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAGCCGTCAAAA190.24068913098555864No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGACCCGCTTTGT180.2280212819863187No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTTAACCGTCAAAA160.20268558398783887No Hit
CGGAAGGATCATTACCACACCAAAAGAACTATCCACGTGAACCGTCAAAA160.20268558398783887No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCGCTTTGTAT140.177349885989359No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGCTTTGTA140.177349885989359No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCGCTTTGTAT140.177349885989359No Hit
CGGAAGTATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAA140.177349885989359No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTCTGTAT130.16468203699011907No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAC120.15201418799087915No Hit
CGGAAGGATCATTACAACACCAAAAACTATCCACGTGAACCGCTTTGTAT120.15201418799087915No Hit
CGGAAGGATCATTACCACACCAAAAAACCTATCCACGTGACCCGTCAAAA120.15201418799087915No Hit
CTGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT110.1393463389916392No Hit
CGGAAGTATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT110.1393463389916392No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTCAAAG110.1393463389916392No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGAACCGTTAAAC100.12667848999239928No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGTGGACCGTCAAAA100.12667848999239928No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA100.12667848999239928No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCGCTTTGTAT100.12667848999239928No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCCTTGTAT90.11401064099315936No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTATCCACGTGAACCGTCAAAA90.11401064099315936No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCGCTTTGTAT90.11401064099315936No Hit
TGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT90.11401064099315936No Hit
CGGAAGGATCATTACCACACCAAAAAAACTATCCACGCGAACCGTCAAAA90.11401064099315936No Hit
CGGAAGGATCATTACCACACCAAAAAAGCTATCCACGTGAACCGTCAAAA80.10134279199391943No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT80.10134279199391943No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCGCTTTGTAT80.10134279199391943No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTCAAAAAA80.10134279199391943No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCGCGTGAACCGCTTTGTAT80.10134279199391943No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCGCTTTGTAT80.10134279199391943No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCGCTTTGTAT80.10134279199391943No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)