FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi759.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi759.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2977
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA128943.298622774605306No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT74424.991602284178704No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC953.191132012092711No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACTGTCAAAC431.4444071212630165No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCACTTTGTA351.175680214981525No Hit
CGGAAGGATCATTACCAAACCAAAAAACTATCCACGTGAACCGTTACATA341.1420893516963386No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTACATAC311.0413167618407793No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA150.5038629492777964No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTTAACCGTTACATA150.5038629492777964No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT140.47027208599261006No Hit
CGGAAGGATCATTACCACACCAAAAAAATATCCACGTGAACCGTTACATA130.43668122270742354No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACAGTTACATA120.40309035942223714No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT100.3359086328518643No Hit
CGGAAGGATCATTACCACACCAGAAAACTATCCACGTGAACCGTTACATA90.3023177695666779No Hit
CGGAAGGATCATTACCACACCAAAAAACTACCCACGTGAACCGTTACATA90.3023177695666779No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTACATACC90.3023177695666779No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT80.26872690628149143No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGCTACATA80.26872690628149143No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGCGAACCGTTACATA80.26872690628149143No Hit
CGGAAGGATCATTACCACACCAAAAATTATCCACGTGAACCACTTTGTAT70.23513604299630503No Hit
CGGAAGGATCATTACCACACCAAAAACTACCCACGTGAACCACTTTGTAT60.20154517971111857No Hit
CGGAATGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA60.20154517971111857No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT60.20154517971111857No Hit
CGGAAGGATCATTACCACACCAAAAACCATCCACGTGAACCACTTTGTAT60.20154517971111857No Hit
CGGAAGGATCATTACCACACCAAAAAACTATACACGTGAACCGTTACATA60.20154517971111857No Hit
CGGAAAGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA60.20154517971111857No Hit
CGGAAGGATCATTACCACACCAAAAAACTATTCACGTGAACCGTTACATA60.20154517971111857No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCGCGTGAACCGTTACATA60.20154517971111857No Hit
CGGAAGTATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA60.20154517971111857No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT50.16795431642593214No Hit
CTGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA50.16795431642593214No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG50.16795431642593214No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCTACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAGAACTATCCACGTGAACCACTTTGTAT40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAGAACTATCCACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACATCAAAAAACTATCCACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTTTCCACTTTGTTT40.13436345314074571No Hit
CGGAAGGATTATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCATGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTAAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATG40.13436345314074571No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCTGTCAAAC40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT40.13436345314074571No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACTGTCAAAC40.13436345314074571No Hit
CGGAAGGATCATTACCCCACCAAAAAACTATCCACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAGGATCATTACCACACCAAAAGACTATCCACGTGAACCGTTACATA40.13436345314074571No Hit
CGGAAAGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCATACCAAAAACTATCCACGTGAACCACTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAAACCATCCACGTGAACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT30.10077258985555929No Hit
GGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTATT30.10077258985555929No Hit
CGGAAGGAGCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACTCGGCAGCAGTGGATGTCTAGGCTCTGTCTCT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCAACGTGAACCACTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTGCATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCAACGTGAACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTCTGTAT30.10077258985555929No Hit
CGTAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGTACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCCCTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCGAAAAACTATCCACGTGAACCGTTACATA30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAGCTATCCACGTGAACCACTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACAACACCAAAAAACTATCCACGTGAACCGTTACATA30.10077258985555929No Hit
CAGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.10077258985555929No Hit
CGGAATGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT30.10077258985555929No Hit
CGGAAGGATCATTACCACACCAAAAACTGTCCACGTGAACCACTTTGTAT30.10077258985555929No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)