FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi758.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi758.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1368
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT61344.80994152046784No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC705.116959064327485No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCGTAGCGAATCTC554.02046783625731No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC463.3625730994152043No Hit
CGGAAGGATCATTACCACACAGCAGTGGATGTCTAGGCTCTGTCTCTTAT231.6812865497076022No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT211.5350877192982455No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC191.3888888888888888No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC181.3157894736842104No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT181.3157894736842104No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT171.2426900584795322No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT161.1695906432748537No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC151.0964912280701753No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA151.0964912280701753No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC120.8771929824561403No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT100.7309941520467835No Hit
CGGAAGGATCATTACCACGGTGTATAAGAGACAGCAGTGGATGTCTAGGC100.7309941520467835No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCGTCGCGAATCTC80.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACACGACACCAGCAGTGGATGTCTAGGCT70.5116959064327485No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT70.5116959064327485No Hit
CGGAAGGATCATTACCACGAGGCAGCAGTGGATGTCTAGGCTCTGTCTCT70.5116959064327485No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT70.5116959064327485No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTATCT60.43859649122807015No Hit
CGGAATGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.36549707602339176No Hit
CGGAAGGATCATTACCACGAGACAGCGGAAGGATCATTACCACGAGACAG50.36549707602339176No Hit
CGGAAGGATCATTACCACTAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.36549707602339176No Hit
CGGAAGGATCATTACCACGATACAGCAGTGGATGTCTAGGCTCTGTCTCT40.29239766081871343No Hit
CTGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.29239766081871343No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA40.29239766081871343No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCCGAGACCGTAGCGAATCTC40.29239766081871343No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA40.29239766081871343No Hit
CGGAAGGATCATTATCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.29239766081871343No Hit
CGGAAGGATCATTACCACGAAACAGCAGTGGATGTCTAGGCTCTGTCTCT30.21929824561403508No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTATGTC30.21929824561403508No Hit
CGGAAGGATCATTACCACGAGACCGAGCCCACGAGACAGCAGTGGATGTC30.21929824561403508No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCGTAGCGAACCTC30.21929824561403508No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTATAGGCTCTGTCTCT30.21929824561403508No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCGTTGCGAATCTC30.21929824561403508No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC30.21929824561403508No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGATGTCTAGGCTCTGTCTCTT30.21929824561403508No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.21929824561403508No Hit
CGGAAGGATCATTACCACTCCGAGCCCACGAGACCGTAGCGAATCTCGTA30.21929824561403508No Hit
CGGAAGGATTATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACATCTCCGAACCCACGAGA20.14619883040935672No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTTT20.14619883040935672No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGAAGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATCATTACCACGAGACCACGAGACAGCAGTGGATGTCTAGGCT20.14619883040935672No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.14619883040935672No Hit
CGGAAGTATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATCATTACCACATCTGACGCTCGTCGGCAGCAGTGGATGTCTA20.14619883040935672No Hit
CGGAAGGATCATTACCACGAGACAGCAATGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCCGTGGATGTC20.14619883040935672No Hit
CGGAAGGATCATTACCAAATCTCCGAGCCCACGAGACAGCAGTGGATGTC20.14619883040935672No Hit
CGGAAGGATCATTACCACTCGTCGACAGCAGTGGATGTCTAGGCTCTGTC20.14619883040935672No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCGCTGTC20.14619883040935672No Hit
CGGAAGGAGCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATAATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGAACATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTATGCTCTGTCTCT20.14619883040935672No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGTATGTCTAGGCTCTGTCTC20.14619883040935672No Hit
CGGAAGGATCATTACAACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT20.14619883040935672No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTTGATGTCTAGGCTCTGTC20.14619883040935672No Hit
TGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.14619883040935672No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)