FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi757.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi757.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1560
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT84954.42307692307692No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC704.487179487179487No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC543.4615384615384617No Hit
CGGAAGGATCATTACCACGTCAGCAGTGGATGTCTAGGCTCTGTCTCTTA352.2435897435897436No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT221.4102564102564104No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC211.3461538461538463No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT191.217948717948718No Hit
CGGAAGGATCATTACCACGCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT181.153846153846154No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA161.0256410256410255No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT140.8974358974358974No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCGTAGCGAATCTC130.8333333333333334No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC120.7692307692307693No Hit
CGGAAGGATCATTACCACGAGGCAGCAGTGGATGTCTAGGCTCTGTCTCT110.7051282051282052No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT90.576923076923077No Hit
CGGAAGGATCATTACCACATCTCCGAACCCACGAGACAGCAGTGGATGTC70.4487179487179487No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA70.4487179487179487No Hit
CGGAAGGATCATTACCACGATACAGCAGTGGATGTCTAGGCTCTGTCTCT60.38461538461538464No Hit
CGGAAGGATCATTACCACAAGACAGCAGTGGATGTCTAGGCTCTGTCTCT60.38461538461538464No Hit
CGGAAGGATCATTACCACGAGACAGCGGAAGGATCATTACCACGAGACAG60.38461538461538464No Hit
CGGAAGGATTATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.3205128205128205No Hit
CGGAAGGATCATTACCACGAACCAGCAGTGGATGTCTAGGCTCTGTCTCT50.3205128205128205No Hit
CGGAAGGATCATTACCACGGGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.3205128205128205No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC50.3205128205128205No Hit
CGGAATGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.2564102564102564No Hit
CGGAAGTATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.2564102564102564No Hit
CGGAAGGATCATTACCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCTT40.2564102564102564No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC40.2564102564102564No Hit
CGGAAGGATCATTACCACTAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.2564102564102564No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTCTAAGAGACA30.19230769230769232No Hit
CGGAAGGATCATTACAACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.19230769230769232No Hit
CGGAAGGATCATTACCACAAGACCAGCAGTGGATGTCTAGGCTCTGTCTC30.19230769230769232No Hit
CGGAAGGATCATTACCACGAGACCAGCCGTGGATGTCTAGGCTCTGTCTC30.19230769230769232No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCCGTCTCT30.19230769230769232No Hit
CGTAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.19230769230769232No Hit
CGGAAGGACCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.19230769230769232No Hit
CGGAAGGATCATTACCACGAGACACGACACCAGCAGTGGATGTCTAGGCT30.19230769230769232No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCGCTGTC30.19230769230769232No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA30.19230769230769232No Hit
CAGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.19230769230769232No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTATGCTCTGTCTCT30.19230769230769232No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGAATGTCTAGGCTCTGTCTCT30.19230769230769232No Hit
CGGAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT30.19230769230769232No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT30.19230769230769232No Hit
CGGAAGGATCATTACACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT30.19230769230769232No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.19230769230769232No Hit
CGGAAGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT30.19230769230769232No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTATGCTCTGTC30.19230769230769232No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTTCTT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGCGGATGTCTAGGCTCTGTCTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACATCAGTGGATGTCTAGGCTCTGTCTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCCTT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTTTAGGCTCTGTCTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCC20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCA20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGGCTAGGCTCTGTCTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTAT20.1282051282051282No Hit
CGGAAGGATCATTACCACATCTGACGCTGCCGCGACAGCAGTGGATGTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTGGTA20.1282051282051282No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGCAGTGGATGTCTAGGC20.1282051282051282No Hit
CGGAAGGATCATTACCACCGTCGGCATCAGTGGATGTCTAGGCTCTGTCT20.1282051282051282No Hit
CGGAAGAATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1282051282051282No Hit
CGGAAGGATAATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTATAGGCTCTGTCTCT20.1282051282051282No Hit
CGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.1282051282051282No Hit
CGGAAGGATCATTACCACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTT20.1282051282051282No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1282051282051282No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC20.1282051282051282No Hit
CGGAAGGATCATTACCACGGACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.1282051282051282No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACACAGCAGTGGATG20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTTAGGCTCTGTCTCTT20.1282051282051282No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTATGTCTCT20.1282051282051282No Hit
CGGAAGGATCATTACCACAGACTTCGTCGGCAGCAGTGGATGTCTAGGCT20.1282051282051282No Hit
AGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1282051282051282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)