FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi756.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi756.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT9957.89473684210527No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC63.508771929824561No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACCAGCAGTGGATGTCTAGG42.3391812865497075No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC42.3391812865497075No Hit
CGGAAGGATCATTACCACGATACAGCAGTGGATGTCTAGGCTCTGTCTCT31.7543859649122806No Hit
CGGAAGGATCATTACCACGAGCAGCAGTGGATGTCTAGGCTCTGTCTCTT21.1695906432748537No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT21.1695906432748537No Hit
ACACCCAAGCAGATTTACAACGACCCGGCCAATCTGTTCGTGGCCAGCTT21.1695906432748537No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC21.1695906432748537No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC21.1695906432748537No Hit
CGGAAGCATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC10.5847953216374269No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA10.5847953216374269No Hit
CGGAAGGATCATTACACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT10.5847953216374269No Hit
CGGAAGGATCATTACCACAAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT10.5847953216374269No Hit
CGTAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTTCTT10.5847953216374269No Hit
CGGAAGTATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGCGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATATCTAGGCTCTGTCACC10.5847953216374269No Hit
CGGAAGGAGCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGGAACGTATCAAC10.5847953216374269No Hit
CGTAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACATCTCCGCAGCAGTGGAT10.5847953216374269No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC10.5847953216374269No Hit
ACGCCCAAGCAGATCTACGTCACGGTAGTTGAGATCGGACTTCATAAGGT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACGTCGTCGCAGCAGTGGATGTCTAGGCT10.5847953216374269No Hit
CGGAAGGATCATTCCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCTT10.5847953216374269No Hit
ACACCCAAGCAGATCTACATCACGGTAGTTGCGATCGGACTTCATAAGGT10.5847953216374269No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA10.5847953216374269No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC10.5847953216374269No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC10.5847953216374269No Hit
CGGAAGGATCATTACCACTGTCTCTTATACCCCAGCAGTGGATGTCTAGG10.5847953216374269No Hit
CGGAAGGATCATTATCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCCT10.5847953216374269No Hit
CGGAAGGATCATTACCACATCTGACAGCAGTGGATGTCTAGGCTCTGTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGTATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
ACGCCCAAGCAGATCTACATCACGGTAGTTGAGATCGGACTTCATAAGGT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCTT10.5847953216374269No Hit
CGGAAGGATCATTACCACATCTCCGAGCCAGCAGTGGATGTCTAGGCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGACACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTAGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGGGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CTGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATA10.5847953216374269No Hit
CGGAAGGATCATTACCACGGGACCACGAGACAGCAGTGGATGTCTAGGCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTATGTCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCGGAAGGATCATTACCACGAGACAG10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACCACGAGACAGCAGTGGATGTCTAGGCT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGCCTCT10.5847953216374269No Hit
CGGAAGGATCATTACCACTCCTAGCCCACGAGACAGCAGTGGATGTCTAG10.5847953216374269No Hit
CGGAAGGATCATTACCACTGTCCCTTATACACCAGCAGTGGATGTCTAGG10.5847953216374269No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCGTCAGATGTGTATAAGAGACA10.5847953216374269No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCAATCTGTTCGTGGCCAGCTT10.5847953216374269No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGGCTAGGCTCTGTCCTC10.5847953216374269No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)