FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi755.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi755.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1266
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT57945.7345971563981No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC886.9510268562401265No Hit
CGGAAGGATCATTACCACGAGACACAGCAGTGGATGTCTAGGCTCTGTCT352.764612954186414No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAT342.6856240126382307No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA342.6856240126382307No Hit
CGGAAGGATCATTACCACGGACAGCAGTGGATGTCTAGGCTCTGTCTCTT302.3696682464454977No Hit
CGGAAGGATCATTACCACGTCGTCAGCAGTGGATGTCTAGGCTCTGTCTC241.8957345971563981No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC201.579778830963665No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCGTAGCGAATCTC141.1058451816745656No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGCAGTGGATGTCTAGGCTC141.1058451816745656No Hit
CGGAAGGATCATTACCACCGTCGGCAGCAGTGGATGTCTAGGCTCTGTCT141.1058451816745656No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC131.0268562401263823No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC131.0268562401263823No Hit
CGGAAGGATCATTACCACTCCGAGCCCACGAGACAGCAGTGGATGTCTAG100.7898894154818324No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT90.7109004739336493No Hit
CGGAAGGATCATTACCACATCTCCGAGCCAGCAGTGGATGTCTAGGCTCT90.7109004739336493No Hit
CGGAAGGATCATTACCACAAGACAGCAGTGGATGTCTAGGCTCTGTCTCT80.631911532385466No Hit
CGGAAGGATCATTACCACGAGGCAGCAGTGGATGTCTAGGCTCTGTCTCT80.631911532385466No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT70.5529225908372828No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCAGTGGATGTC60.47393364928909953No Hit
CGGAAGGATTATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.3949447077409162No Hit
CGGAAGGATCATTACCACGGGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.3949447077409162No Hit
CGGAAGGATCATTACCAAGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT50.3949447077409162No Hit
CGGAAGGATCATTACCACGGACAGCAGTGGATGTCTCGGCTCTGTCTCTT40.315955766192733No Hit
CGGAAGGATAATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT40.315955766192733No Hit
CGGAAGGATCATTACCACTCGTCGTCAGCAGTGGATGTCTAGGCTCTGTC40.315955766192733No Hit
CGGAAGGATCATTACCACGGACAGCAGTGGCTGTCTAGGCTCTGTCTCTT40.315955766192733No Hit
CGGAAGGATCATTACCACCCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC30.23696682464454977No Hit
CGGAAGGATCATTACCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCTT30.23696682464454977No Hit
CGGAAGGATCATTACCACGAGACAGCAGTTGATGTCTAGGCTCTGTCTCT30.23696682464454977No Hit
CGGAAGGATCATTACCACGACAGCAGTGGATGTCTAGGCTCTGTCTCTTA30.23696682464454977No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGAATGTCTAGGCTCTGTCTCT30.23696682464454977No Hit
CGGAAGGATCATTACCACGTCGGCAGCAGTGGATGTCTAGGCTCTGTCTC30.23696682464454977No Hit
CGGAAGGATCATTACCACTAGACAGCAGTGGATGTCTAGGCTCTGTCTCT30.23696682464454977No Hit
CGGAAGGATCATTACCACGACACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGATACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT20.1579778830963665No Hit
CGGAAGTATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGTAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACTCAGCAGTGGATGTCTAGGCTCTGTCTCTTAA20.1579778830963665No Hit
CGGAAGGATCATTACCACGTACAGCAGTGGATGTCTAGGCTCTGTCTCTT20.1579778830963665No Hit
CGGAAGGATCATTACCACATCAGCAATGGATGTCTAGGCTCTGTCTCTTA20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTAGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACACGACACCAGCAGTGGATGTCTAGGCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGCCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACAGCCGTGGATGTC20.1579778830963665No Hit
CGGAAGAATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGGAGTGGATGTCTAGGCTCTGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTATCT20.1579778830963665No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA20.1579778830963665No Hit
CGGAAGGATCATTACCACTCAGCAGTTGATGTCTAGGCTCTGTCTCTTAT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCCTGTCTC20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGCAGTGGATGTCTAGGCTCTGTC20.1579778830963665No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.1579778830963665No Hit
CGGAAGGATCATTACCACTCGTCGCAGCAGTGGATGTCTAGGCTCTGTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGATGTCTAGGCTCTGTCTCTT20.1579778830963665No Hit
CGGAAGGATCATTACCCCTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTATGTCTCT20.1579778830963665No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGGTGTCTAGGCTCTGTCTCT20.1579778830963665No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)