FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi753.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi753.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA4324.15730337078652No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT2312.921348314606742No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA1810.112359550561797No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGT168.98876404494382No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA95.056179775280898No Hit
CGGAAGGATCATTACCACTTATTGCTACAGCAGTGGATGTCTAGGCTCTG63.3707865168539324No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG42.247191011235955No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC31.6853932584269662No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA31.6853932584269662No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA21.1235955056179776No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCCGTGGATGTCTAGGCTCTGT21.1235955056179776No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA21.1235955056179776No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC21.1235955056179776No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTAA21.1235955056179776No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA21.1235955056179776No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA21.1235955056179776No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGAACCGTTGTA10.5617977528089888No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCGTGGATGTCTAGGCTCTGTC10.5617977528089888No Hit
CGGAAGGATCATTACCACTAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5617977528089888No Hit
CGGAAGGATCTTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGTAAT10.5617977528089888No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAATGGATGTCTAGGCTCTGT10.5617977528089888No Hit
ACGCCCAAGCAGATCTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.5617977528089888No Hit
CGGAAGGATCATTACCACACGTAAAAACTTTCCACGTGAACCGTATCAAA10.5617977528089888No Hit
CGGAAGAATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA10.5617977528089888No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTAT10.5617977528089888No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCTGTGGATGTCTAGGCTCTGT10.5617977528089888No Hit
CGGAAGGATCATTACCCCACCTAAAAACTTTCCACGTGAACCGTATTCAA10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGA10.5617977528089888No Hit
CGGAAGGATCATTACTACACCTAAAAAACTTTCCACGTGACCCGTATTCA10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTTGTAA10.5617977528089888No Hit
CGGAAGGATCATTACCACTTATTGCCACAGCAGTGGATGTCTAGGCTCTG10.5617977528089888No Hit
AGACCGGGAATGTACATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT10.5617977528089888No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCGCT10.5617977528089888No Hit
CGCAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT10.5617977528089888No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTTCCACGTGAACCGTTGTAA10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACCTGAAACCTTACTAC10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCACTTTGT10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGGCCCGTATTCA10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTCTCCACGTGAACCGTATTCA10.5617977528089888No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGTATGTCTAGGCTCTGTCTCT10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCAACGTGAACCGTATTCA10.5617977528089888No Hit
CGGAAGGATCATTACCACGTCGTCGGCAGCAGTGGATGTCTAGGCTATGT10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAAACGTATCAA10.5617977528089888No Hit
ACACCCAAGCAGATTTACAACGACCCGGCCAACCTGTTTGTGGCCAGCTT10.5617977528089888No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5617977528089888No Hit
CTGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA10.5617977528089888No Hit
CGGAAGGATCATTACTACGATACAGCAGTGGATGTCTATGCTCTGTCTCT10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAA10.5617977528089888No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTTTAGGCTCTGTCTCT10.5617977528089888No Hit
CGGAAGGATCATTACCACGTCGTCGGCCGCAGTGGATGTCTAGGCTCTGT10.5617977528089888No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGGCCCGTTGTAA10.5617977528089888No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA10.5617977528089888No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATCAA10.5617977528089888No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)