FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi752.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi752.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1281
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC56243.871975019516No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC23218.110850897736146No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT15612.177985948477751No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTGTCTTAGCA685.3083528493364565No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA171.3270882123341141No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC80.624512099921936No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTTAGC80.624512099921936No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACTGTCGTTAT40.312256049960968No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC40.312256049960968No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAGCCGTATCAAC30.234192037470726No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC30.234192037470726No Hit
CGGAAGGATCATTACCACACCTAAAAAATATCCACGTGAACCGTATCAAC30.234192037470726No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC30.234192037470726No Hit
CGGAAGTATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC30.234192037470726No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTGTCGTTATT30.234192037470726No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC30.234192037470726No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTACATA20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAGCTATCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC20.156128024980484No Hit
GGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACTGTCGTTAT20.156128024980484No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACTGTCGTTATTT20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGCGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCGTATCAAC20.156128024980484No Hit
CGGAAGGACCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACTGTCGTTAT20.156128024980484No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACTGTCGTTAT20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACC20.156128024980484No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA20.156128024980484No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACA20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTAAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTAAACTGTCTTAGCA20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC20.156128024980484No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTACCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCGAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACAGTATCAAC20.156128024980484No Hit
CGTAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCATATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
AGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTGCCTTAGCA20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCCCGTTAACCGTATCAAC20.156128024980484No Hit
CGGAAGGATCATTACCACACCTAGAAACTATCCACGTGAACCGTATCAAC20.156128024980484No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)