FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi751.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi751.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11733
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA364731.083269411062815No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA281523.992158868149662No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA120010.227563283047814No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC4333.6904457512997526No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC2051.747208727520668No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA1711.4574277678343135No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGAACTGTATCAA1391.1846927469530386No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA1070.9119577260717634No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA930.7926361544362055No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA900.767067246228586No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC570.4858092559447712No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA500.42614847012699225No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC490.41762550072445237No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA400.34091877610159377No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC400.34091877610159377No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA400.34091877610159377No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCACGTGAACTGTATCAAAA370.3153498678939743No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATAAAA370.3153498678939743No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA310.2642120514787352No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA270.2301201738685758No Hit
CGGAAGGATCATTACCACCCTAAAAAACTTCCACGTGAACTGTATCAACA270.2301201738685758No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA250.21307423506349613No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCACGTGAACTGTATCAAA250.21307423506349613No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATCAAAAC240.2045512656609563No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA230.19602829625841642No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA220.1875053268558766No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTCCACGTGACCTGTATCAA210.17898235745333674No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAA210.17898235745333674No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATCAA200.17045938805079688No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAGCTGTATCAAA200.17045938805079688No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTGTCAAA200.17045938805079688No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAA190.16193641864825706No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAA180.1534134492457172No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAA180.1534134492457172No Hit
CGGAAGGATCATTACCACGCCTAAAAAACTTCCACGTGAACTGTATCAAA180.1534134492457172No Hit
CGGAAGGATCATTACCACCTAAAAAACTTTCCACGTGAACCGTATTCAAC170.14489047984317735No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCTACGTGAACCGTATCAAA170.14489047984317735No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTCCACGTGAACTGTATCAAA170.14489047984317735No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA160.13636751044063752No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA160.13636751044063752No Hit
CGGAAGGATCATTACCACACTTAAAAAACTTCCACGTGAACTGTATCAAA160.13636751044063752No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA160.13636751044063752No Hit
CGGAAGTATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA160.13636751044063752No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAA150.12784454103809767No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA150.12784454103809767No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG150.12784454103809767No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAA150.12784454103809767No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAA150.12784454103809767No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA140.11932157163555782No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCGCGTGAACTGTATCAAA140.11932157163555782No Hit
CGGAATGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA140.11932157163555782No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA130.11079860223301799No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA130.11079860223301799No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAGA120.10227563283047815No Hit
CGGAAGGATCATTACCAAACCTAAAAAACTTCCACGTGAACTGTATCAAA120.10227563283047815No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA120.10227563283047815No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGA120.10227563283047815No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA120.10227563283047815No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGCGAACTGTATCAAA120.10227563283047815No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)