FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi750.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi750.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6438
Sequences flagged as poor quality0
Sequence length301
%GC42

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC199530.987884436160297No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG106716.573470021745884No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAA75411.711711711711711No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA6259.70798384591488No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTG1652.562907735321528No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGAAA871.3513513513513513No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA861.3358185771978874No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC651.0096303199751475No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTCAA620.9630319975147562No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTG470.730040385212799No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA440.6834420627524076No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGAACCGTATTCA270.4193849021435228No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTGT210.32618825722274No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTACCACGTGAATCTGTACTG200.31065548306927615No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC200.31065548306927615No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAA200.31065548306927615No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCCGTACTG190.2951227089158123No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCTGTACTGT190.2951227089158123No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTAA190.2951227089158123No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC150.2329916123019571No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC150.2329916123019571No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC150.2329916123019571No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC130.20192606399502952No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA130.20192606399502952No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAATCTGTACTGT130.20192606399502952No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC130.20192606399502952No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTATAA120.1863932898415657No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGAAAA120.1863932898415657No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC110.1708605156881019No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAC110.1708605156881019No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTGTT110.1708605156881019No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC110.1708605156881019No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC100.15532774153463808No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC100.15532774153463808No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC90.13979496738117428No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC90.13979496738117428No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATTAAA90.13979496738117428No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC90.13979496738117428No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC80.12426219322771047No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGTCTGTACTG80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAATCTGTACTG80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAAAACCTTCCACGTGAACCGTATTCA80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC80.12426219322771047No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTTCCACGTGACCCGTATTCA80.12426219322771047No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTG80.12426219322771047No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCTGTACTG70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTTGAAA70.10872941907424667No Hit
CGGAAGTATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATCAA70.10872941907424667No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA70.10872941907424667No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA70.10872941907424667No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATATCAAC70.10872941907424667No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)