FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITS-OOChi749.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITS-OOChi749.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1419
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA24116.983791402396054No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT23116.27906976744186No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC1399.795630725863285No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC654.580690627202255No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC503.5236081747709656No Hit
CGGAAGGATCATTACCACATCTCAGCAGTGGATGTCTAGGCTCTGTCTCT412.8893587033121917No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCTCTGTCTCTT402.8188865398167726No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT392.748414376321353No Hit
CGGAAGGATCATTACCACATCTCCGCAGCAGTGGATGTCTAGGCTCTGTC372.6074700493305145No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCTCTGTCTCT352.466525722339676No Hit
CGGAAGGATCATTACCACGAGACCCAGCAGTGGATGTCTAGGCTCTGTCT322.255109231853418No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT322.255109231853418No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT281.9732205778717407No Hit
CGGAAGGATCATTACCACATCTCCCAGCAGTGGATGTCTAGGCTCTGTCT241.6913319238900635No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC241.6913319238900635No Hit
CGGAAGGATCATTACCACTGTCTCTTATACACACAGCAGTGGATGTCTAG191.3389711064129668No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT90.6342494714587738No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTCGGCTCTGTC90.6342494714587738No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT80.5637773079633545No Hit
CGGAAGGATCATTACCACACCTCAGCAGTGGATGTCTAGGCTCTGTCTCT60.42283298097251587No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGTCTGTACTT60.42283298097251587No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC60.42283298097251587No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATATGTACTT30.21141649048625794No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAA30.21141649048625794No Hit
CGGAAGGATCATTACCACACCAAAAGAACTTACCACGTGAATCTGTACTT30.21141649048625794No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA30.21141649048625794No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCCCTTATAC30.21141649048625794No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTGCTTT30.21141649048625794No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC30.21141649048625794No Hit
CTGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC30.21141649048625794No Hit
CGGAAGGATCATTACCACACCAAAAAACTTCCCACGTGAATCTGTACTTT30.21141649048625794No Hit
CGGAATGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTATCACGTGAATCTGTACTT20.14094432699083861No Hit
CGGAAGGATCATTACCACAGCAATGGATGTCTAGGCTCTGTCTCTTATAC20.14094432699083861No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTGCTT20.14094432699083861No Hit
CGGAAGGATCATTACCACCAGACCCAGCAGTGGATGTCTAGGCTCTGTCT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA20.14094432699083861No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA20.14094432699083861No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTTAACCGTATCAAA20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAATCTGTACTTT20.14094432699083861No Hit
CGGAAGGATCATTACCACGAGACAGCAGTGGATGTCTAGGCCCTGTCTCT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC20.14094432699083861No Hit
CGGAAGTATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC20.14094432699083861No Hit
CGGAAGTATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC20.14094432699083861No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAA20.14094432699083861No Hit
CGGAAGGATCATTACCACATCCAGCAGTGGATGTCTAGGCCCTGTCTCTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCTGTACTTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA20.14094432699083861No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA20.14094432699083861No Hit
CGGAAGGATCATTACCACATCCAGCAGTTGATGTCTAGGCTCTGTCTCTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGACTCTGTACTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAGTCTGTACTTT20.14094432699083861No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAA20.14094432699083861No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.14094432699083861No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA20.14094432699083861No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTATCAAA20.14094432699083861No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)